| Protein: | l(3)mbt-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1477 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)mbt-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
898.0 | [0..1] | [1477..1] |
|
Region A: Residues: [1-225] |
1 11 21 31 41 51
| | | | | |
1 MLPLSMASAE AKQLQRNISL SMSPANGGVI SPSTANCNGV ASASGGNPNP NSLLTLAPRK 60
61 EELRFLPLAP MGGNKTCNIT ISNVQPMKSK LKSVNIVPNS IKSAGAGATV GSADAPLFQL 120
121 VPSPSNPSQP LVAILAPNRK TTLLGGGASN GQPVVIRSGT PLHKNSLTVE TSNKPIQPGG 180
181 SAAAAAVGGG TGGAPLTLVG KTVVPPKIQA ATPVQIPSTG PGAQV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [226-434] |
1 11 21 31 41 51
| | | | | |
1 SLLANPLKPR APLILSKVAV DKLRLKFSQV KSNPNALVLG KANHVKKLLT SPNPSGEDKT 60
61 RSTQKNNKQN TSASQLKPVV APKTAMPIAT EVPTADNNKM SLIKSKPVAI KAVPLPSQEA 120
121 PIVPAVAPVV TSPEKVDVKP TAKPSIKTAP KPTPKPLEMS VNGPAKEKKA PAKEQKQKTM 180
181 DKPPVVKEIA QHTPCGPKEL PKLKRSKSF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [435-607] |
1 11 21 31 41 51
| | | | | |
1 VSNHPASPVA NNERRHSVAI MAKEVDVIEQ PSAAIETITI EDDDESEEEQ QKPEIKKTPK 60
61 QNQKPEKQEA PKKKQIPMPI LPAGITISTT STAKKKAVRK NSSVTTISSS SSDSSSYSDV 120
121 EVVPTKKTEK ELSMLPGISI IKAESLPLSR EDFERSLRCD EQVPQTPPKS SSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [608-739] |
1 11 21 31 41 51
| | | | | |
1 SSSGSHASEM SPPPKLADPK PSSPPAKNAK KANDHDANPS PSSKTNDFKK SMMQNLNMLK 60
61 WRGQQPANLQ NSTVRFELNE FNFLQINERC QPRQGPAAYF ERPLYDRPGR RPSACVHPLL 120
121 YLCQRCNFHG PA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [740-815] |
1 11 21 31 41 51
| | | | | |
1 ADFLAPHFCS VGCVRRSQKR RLPQSTQKES KISRTQLEQT AGTAPDLPQK RQTNYKPHKS 60
61 LSAIQEQLQQ RQKDKP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [816-1130] |
1 11 21 31 41 51
| | | | | |
1 RKPFRWSEYL KSKGKDVAAP IHLFLNPFPI SPNCFEIGMK LEAIDPENCS LFCVCSIVEV 60
61 RGYRLKLSFD GYSSMYDFWV NADSQDIFPP GWCDETARVL QAPKDYNSER FSWSRYLVKT 120
121 GGKAAPRALF GHLNMQQQMD VRNGFAVGMH LEAEDLNDTG KICVATVTDI LDERIRVHFD 180
181 GWDDCYDLWV HITSPYIHPC GWHEGRQQLI VPPDYQKSAF IWDDYISEVG GMAASKELFT 240
241 PRQPMEYQER MKLEVVDQRN PCLIRPATVV TRKGYRVQLH LDCWPTEYYF WLEDDSPDLH 300
301 PIGWCEATSH ELETP
|
| Detection Method: | |
| Confidence: | 144.0 |
| Match: | 2pqwA |
| Description: | No description for 2pqwA was found. |
|
Region A: Residues: [1131-1299] |
1 11 21 31 41 51
| | | | | |
1 PGYLQPKSVM PCDVEGCRGF GNAKRFNLNV HALRECCPYA PENWRQWRSK TVKPPRVAPE 60
61 NIRRGWAKKT KRACSEAKQA IKEDSQQEIV YPKVAEVVQA KRKTSPCEEK VVKKQKQMQK 120
121 EEDAEQVPDE RSLAIARSFV KDYGPQFLPN YRLWQLNSAF KLDDVRTNP
|
| Detection Method: | |
| Confidence: | 1.59 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [1300-1380] |
1 11 21 31 41 51
| | | | | |
1 LHWTSWDVCE YIERALDSTD IAKVIFEQDI DGRALLMLGR KELDTYLKLK VGPAVKLYSL 60
61 ILNLRIAVVC KFDSKNIELE S
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1pk3A |
| Description: | Scm SAM domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.32682088990761 | bayes_pls_golite062009 |
| transcription regulator activity | 3.30659353957398 | bayes_pls_golite062009 |
| DNA binding | 2.70497733333132 | bayes_pls_golite062009 |
| nucleic acid binding | 2.6812146845966 | bayes_pls_golite062009 |
| transcription factor activity | 2.23426547892206 | bayes_pls_golite062009 |
| protein binding | 2.12913758162323 | bayes_pls_golite062009 |
| transcription repressor activity | 1.84254690430222 | bayes_pls_golite062009 |
| chromatin binding | 1.6208950488941 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.31446495493975 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.51354463132415 | bayes_pls_golite062009 |
| catalytic activity | 0.0451617952658021 | bayes_pls_golite062009 |
|
Region A: Residues: [1381-1477] |
1 11 21 31 41 51
| | | | | |
1 NTAGPIQREM DTPVSAIKQL PEQSQTNGYK TDHDQELSES GDDDDDEDVM LDSDDFLSVK 60
61 PSCLVIDEDA DGDGDCESDG DVAMVPMEVR TPLRTSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
