YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: bam-PA
Organism: Drosophila melanogaster
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bam-PA.

Description E-value Query
Range
Subject
Range
gi|21430780, gi|... - gi|83939959|gb|ABC48740.1| bag of marbles [Drosophila melanogaster], gi|83939953|gb|ABC48736.1| bag ...
900.0 [0..1] [442..1]

Back

Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNARDVCPE GNDDQQLDHN FKQMEEHLAL MVEGNENEDP RKATCEYEDT NEDGATCTSG  60
   61 VLSEIQENFG RLRLCDVTAP LLEFHGLDCL QQIQKRSRHF AFDGSPAKKS RSGGVLVTGP 120
  121 KQKQLQKENV WNRKSKGSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SADNIEKLPI TIEKLHMIGL HGDCLEHNAV LRLMNLFRSL HDHLTADLGF SRQNSMPSDY  60
   61 LFDMPVKSTM PKSLNVRYQL QVLCTKVERF LVQQRRTLEA NRHFDFEKYD ECDKLLKGFA 120
  121 SYLDNFKLLL KPKMRNRNGN SGSNADKFHT QRMERLLIGL RDWIKAAHLS VHVFNWEMDL 180
  181 EHRYSGAMTE SHKSLNERAI LLSGAELRAA EARG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [354-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISAEDLFIAQ RYKLGGPIYC VLEQHEFLSA LIANPETYFP PSVVAICGPQ KLGAVSMEQP  60
   61 SASEEEFEET EEVPSSPPRH TGRVPRFRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle