| Protein: | Smg6-PA |
| Organism: | Drosophila melanogaster |
| Length: | 948 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Smg6-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
511.0 | [0..1] | [948..1] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MSRKGTREQN DISLIIGTLP KRLQNKIAAS CSHAAAAATT TKALETENAE NAEPVATTAN 60
61 ASRPVEILSN ASTGGGKPDA QSKQPVLDTS GKMAWEGGIP GILRVTTSVA GDVNRNGQGQ 120
121 GKNKSGNSAR RRGRKDKEHA TQSPVTRTRL TTEHPDWFEP LLGLPHAK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [169-684] |
1 11 21 31 41 51
| | | | | |
1 NIVHLYDQLM VLNQRNLILI NWKNFCYIHD QLQDAFKQLL LEQLKFVCEH KVDVFFWKLL 60
61 FYNVRNYLKR QQTDQAHTHT LLLIEQAIKF YRMLYDKLMA KCVASSRCDS ALKVVAQRLL 120
121 ICLGDLTRYR VNHVKATDYM EAARYYQRAQ ELVPGNGAPF NQLAVISIYH HKRFDAVYYY 180
181 VRSLLTSNSI QSAKESLLDL FDEIRRKYEE TEMKQSPMHY AAGSKNQKSK QMRKEVWIYP 240
241 DGIRRLHRTD DKGNKAKGNK ATMAEVNRYE EMPPEEILPR IVSLYLYLLG KLYTGTDVDS 300
301 LYPLLRKLQI QIGVALRHEN LLSRSKLLKI VALNLFVVEH NKPKTSRREM RYHSFNFANS 360
361 FFGLMMKKTN QLLAGFVEDS TNVQCLPEED FATVNTYLQF VNVYVRWLSI SLDVWEPVRS 420
421 EEHSFIDCWA ELTILFEYIE CLMGKHKLEK NEILLDEDVA LRGFTPLGRE TLSMDYLKRG 480
481 SERLQFFERV RRIGQFQEYY VQHQEALQQP LESSFT
|
| Detection Method: | |
| Confidence: | 28.045757 |
| Match: | 1ya0A |
| Description: | Crystal structure of the N-terminal domain of human SMG7 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787280988128024 | bayes_pls_golite062009 |
| protein binding | 0.212989569759479 | bayes_pls_golite062009 |
| hydrolase activity | 0.142615944899055 | bayes_pls_golite062009 |
|
Region A: Residues: [685-777] |
1 11 21 31 41 51
| | | | | |
1 VEHLNAAMKN ALENYDAESC GLAANVSKIQ CKAVEELLCR STDSDVSELC KLKKELEAKA 60
61 RVKQICTSKL EDILKFVDTK IYIEVRPRYL LPD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [778-948] |
1 11 21 31 41 51
| | | | | |
1 TNCFIDCLED FEKLSTEFKR YTLIIPLTVV KELDGLSKGV KLDSYRSSKQ TQRIHHFDEV 60
61 SSRAKKSLEF IKSAKGNVKC ATTKGSFVNA SVFALVEEEY LSNDDKILAT AMAVSKTAKT 120
121 EQCTDGKCFI QTELVLITTD RNLRVKALSR NLAVSALDEF LQWAKDCRES T
|
| Detection Method: | |
| Confidence: | 35.154902 |
| Match: | 2dokA |
| Description: | No description for 2dokA was found. |
