YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG13630-PA
Organism: Drosophila melanogaster
Length: 374 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13630-PA.

Description E-value Query
Range
Subject
Range
gi|125772915, gi... - gi|54637448|gb|EAL26850.1| GA12422 [Drosophila pseudoobscura pseudoobscura], gi|125772915|ref|XP_001...
gi|125772915|ref... - GA12422-PA [Drosophila pseudoobscura], GA12422 [Drosophila pseudoobscura pseudoobscura]
410.0 [0..1] [374..1]

Back

Predicted Domain #1
Region A:
Residues: [1-65]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQKCETTNC GKDATLQCPT CLKLGIKGSF FCSQPCFKGF WKEHKAIHAL AAGASNSAEQ  60
   61 DGAYN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.02
Match: 2d8qA
Description: No description for 2d8qA was found.

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.07856148407289 bayes_pls_golite062009
binding 2.04387193075129 bayes_pls_golite062009
nucleic acid binding 1.87234530699157 bayes_pls_golite062009
DNA binding 1.80010397318845 bayes_pls_golite062009
protein binding 0.520486355666439 bayes_pls_golite062009
transcription activator activity 0.433279783515038 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.231467468018183 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [66-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWPHFRFTGK LRPFPQTPKR TVPNAIQRPD YADHPAGRSL SEEALRGTKI KVLDDEEIEG  60
   61 MRVAGRLGRE CLDEGAKAVE VGITTDELDR LVHEAAIERE CYPSPLNYYN FPKSCCTSVN 120
  121 EVICHGIPDQ RPLQDGDLCN IDVTVYHRGF HGDLNETFFV GNVSEKHKKL VQVTHEALSK 180
  181 AIEFVRPGEK YRDIGNVIQK YVAPHGFSVV RSYCGHGIHR VFHTAPNVPH YAKNSAVGVM 240
  241 APGHCFTIEP MISVGVQKAE TWPDDWTAVT ADGLYSAQFE QTLLVNETGC EILTKRRENN 300
  301 GQPWFMDKM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.0
Match: 2g6pA
Description: No description for 2g6pA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle