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View Structure Prediction Details

Protein: twin-PB
Organism: Drosophila melanogaster
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twin-PB.

Description E-value Query
Range
Subject
Range
gi|17391192, gi|... - gi|21450299|ref|NP_659159.1| CCR4-NOT transcription complex, subunit 6-like isoform 1 [Mus musculus]...
gi|149046868, gi... - gi|157823321|ref|NP_001101825.1| CCR4-NOT transcription complex, subunit 6-like [Rattus norvegicus],...
419.0 [0..16] [545..15]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNKDKYDS ANRRQQIFLS QEDIAAGKKT NWSGLEITGC VRNISPSLWE FEHLTALYLN  60
   61 DNQLLRLPAD VGMLTSLRTL DLSSNKLRSL PAELGELIQL RELLLNNNFL RVLPYEIGKL 120
  121 FHLVILGLMG NPLQKEFMNI YNEPNGTQKL LTYMLDNLSF TVNPPPQRPW LPLAKPNKTR 180
  181 PACIFTVMCY NVLCDKYATR QMYGYCPSWA LCWEYRKKSI IDEIRHYAAD IISLQEIETE 240
  241 QFYHFFLPEL KNDGYEGIFS PKSRAKTMSE LERKYVDGCA IFFRASKFTL IKESLIEFNQ 300
  301 LAMANAEGSD NMLNRVMPKD NIGLAALLKV KENAWEPMSE VTQISQPLLV CTAHIHWDPE 360
  361 FCDVKLIQTM MLSNELKTII DEASHSFRPG HKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 2z82A
Description: No description for 2z82A was found.

Predicted Domain #2
Region A:
Residues: [394-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNAVQLLLC GDFNSLPDSG VVEFLGKGRV SMDHLDFKDM GYKSCLQRLL SNDTNEFTHS  60
   61 FKLASAYNED IMPHTNYTFD FKGIIDYIFY TKTGMVPLGL LGPVSNDWLR ENKVVGCPHP 120
  121 HIPSDHFPLL VELELMHTAS QQAPPNGLIN RR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.53
Match: 2ddrA
Description: No description for 2ddrA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle