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View Structure Prediction Details

Protein: SPE-PA
Organism: Drosophila melanogaster
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPE-PA.

Description E-value Query
Range
Subject
Range
gi|54637550, gi|... - gi|54637550|gb|EAL26952.1| GA14092-PA [Drosophila pseudoobscura], gi|125773117|ref|XP_001357817.1| G...
308.0 [0..27] [399..2]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTERNFLL LSLVVSALSG LVHRSDAAEI SFGSCTPQQS DERGQCVHIT SCPYLANLLM  60
   61 VEPKTPAQRI LLSKSQCGLD NRVEGLVNRI LVCCPQSMRG NIMDSEPTPS TRDALQQGDV 120
  121 LPGNDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1nfuB
Description: Factor X, N-terminal module
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [127-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGFLFADRIF GGTNTTLWEF PWMVLLQYKK LFSETYTFNC GGALLNSRYV LTAGHCLASR  60
   61 ELDKSGAVLH SVRLGEWDTR TDPDCTTQMN GQRICAPKHI DIEVEKGIIH EMYAPNSVDQ 120
  121 RNDIALVRLK RIVSYTDYVR PICLPTDGLV QNNFVDYGMD VAGWGLTENM QPSAIKLKIT 180
  181 VNVWNLTSCQ EKYSSFKVKL DDSQMCAGGQ LGVDTCGGDS GGPLMVPIST GGRDVFYIAG 240
  241 VTSYGTKPCG LKGWPGVYTR TGAFIDWIKQ KLEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.522879
Match: 2olgA
Description: No description for 2olgA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle