YRC Public Data Repository - Protein Structure Prediction

Protein:	Cby-PB
Organism:	Drosophila melanogaster
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cby-PB.

Description	E-value	Query Range	Subject Range
gi\|66770989, gi\|... - gi\|85815855\|ref\|NP_650989.2\| Chibby CG13415-PA [Drosophila melanogaster], gi\|84796183\|gb\|AAF55929.2\|...	164.0	[0..1]	[100..26]
gi\|55246663, gi\|... - gi\|58384224\|ref\|XP_313122.2\| ENSANGP00000023456 [Anopheles gambiae str. PEST], gi\|58375447\|ref\|XP_30...	145.0	[0..1]	[95..1]
gi\|148224433, gi... - gi\|21666368\|gb\|AAM73680.1\| leucine-rich protein [Xenopus laevis], gi\|148224433\|ref\|NP_001082262.1\| l...	139.0	[0..1]	[95..1]
CBY1_RAT - Protein chibby homolog 1 OS=Rattus norvegicus GN=Cby1 PE=1 SV=1	138.0	[0..1]	[95..1]
CBY1_MOUSE - Protein chibby homolog 1 OS=Mus musculus GN=Cby1 PE=1 SV=1	138.0	[0..1]	[95..1]
gi\|213624050, gi... - gi\|62858941\|ref\|NP_001016253.1\| chibby homolog 1 [Xenopus (Silurana) tropicalis], gi\|213627007\|gb\|AA...	136.0	[0..1]	[95..1]
gi\|21666370, gi\|... - gi\|51467901\|ref\|NP_001003838.1\| leucine-rich protein [Danio rerio], gi\|21666370\|gb\|AAM73681.1\| leuci...	132.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFNKKFES KPIPVRQGRC NIGHPVATED LDDFRQISLT LGNKELRFAD GIWMHSTRKG  60
   61 DVDDMLRLNK KFRALEEENN MCNLKIEVML DLLAERDGTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.863	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits