| Protein: | GABA-B-R2-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1221 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GABA-B-R2-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
678.0 | [0..1] | [1221..1] |
|
Region A: Residues: [1-505] |
1 11 21 31 41 51
| | | | | |
1 MFRPSWFPFA SLLFLLLWST ACGRTAKRSD VYIAGFFPYG DGVENSYTGR GVMPSVKLAL 60
61 GHVNEHGKIL ANYRLHMWWN DTQCNAAVGV KSFFDMMHSG PNKVMLFGAA CTHVTDPIAK 120
121 ASKHWHLTQL SYADTHPMFT KDAFPNFFRV VPSENAFNAP RLALLKEFNW TRVGTVYQNE 180
181 PRYSLPHNHM VADLDAMEVE VVETQSFVND VAESLKKLRE KDVRIILGNF NEHFARKAFC 240
241 EAYKLDMYGR AYQWLIMATY STDWWNVTQD SECSVEEIAT ALEGAILVDL LPLSTSGDIT 300
301 VAGITADEYL VEYDRLRGTE YSRFHGYTYD GIWAAALAIQ YVAEKREDLL THFDYRVKDW 360
361 ESVFLEALRN TSFEGVTGPV RFYNNERKAN ILINQFQLGQ MEKIGEYHSQ KSHLDLSLGK 420
421 PVKWVGKTPP KDRTLIYIEH SQVNPTIYIV SASASVIGVI IATVFLAFNI KYRNQRYIKM 480
481 SSPHLNNLII VGCMMTYLSI IFLGL
|
| Detection Method: |  |
| Confidence: | 77.045757 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [506-575] |
1 11 21 31 41 51
| | | | | |
1 DTTLSSVAAF PYICTARAWI LMAGFSLSFG AMFSKTWRVH SIFTDLKLNK KVIKDYQLFM 60
61 VVGVLLAIDI
|
| Detection Method: | |
| Confidence: | 1.19 |
| Match: | 1xioA |
| Description: | Anabaena sensory rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [576-712] |
1 11 21 31 41 51
| | | | | |
1 AIITTWQIAD PFYRETKQLE PLHHENIDDV LVIPENEYCQ SEHMTIFVSI IYAYKGLLLV 60
61 FGAFLAWETR HVSIPALNDS KHIGFSVYNV FITCLAGAAI SLVLSDRKDL VFVLLSFFII 120
121 FCTTATLCLV FVPKLVE
|
| Detection Method: | |
| Confidence: | 0.951 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [713-1221] |
1 11 21 31 41 51
| | | | | |
1 LKRNPQGVVD KRVRATLRPM SKNGRRDSSV CELEQRLRDV KNTNCRFRKA LMEKENELQA 60
61 LIRKLGPEAR KWIDGVTCTG GSNVGSELEP ILNDDIVRLS APPVRREMPS TTEVTEMTSV 120
121 DSVTSTHVEM DNSFVSVQST VMAPSLPPKK KKQSIVEHHS HAPAPTMMQP IQQQLQQHLQ 180
181 QHQQMQQQHL QQQQHQQMQQ QQQQQQHHHR HLEKRNSVSA QTDDNIGSIT STAGKRSGGD 240
241 CSSMRERRQS TASRHYDSGS QTPTARPKYS SSHRNSSTNI STSQSELSNM CPHSKPSTPA 300
301 VIKTPTASDH RRTSMGSALK SNFVVSQSDL WDTHTLSHAK QRQSPRNYAS PQRCAEHHGG 360
361 HGMTYDPNTT SPIQRSVSEK NRNKHRPKPQ KGTVCQSETD SERERDPPPN SQPCVQPRKV 420
421 SRSSNIQHAA HHHSSPNVAP DKQRSRQRGK QDSSIYGASS ETELLEGETA ILPIFRKLLT 480
481 EKSPNYRGRS AVGQSCPNIS IKCDIVEYL
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 1ciiA |
| Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
|
