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View Structure Prediction Details

Protein: Calx-PA, Calx-PC...
Organism: Drosophila melanogaster
Length: 950 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Calx-PA, Calx-PC....

Description E-value Query
Range
Subject
Range
gi|114653696 - gi|114653696|ref|XP_001144543.1| PREDICTED: solute carrier family 8 member 3 isoform 1 [Pan troglody...
gi|119601427, gi... - gi|15147254|ref|NP_150287.1| solute carrier family 8 (sodium/calcium exchanger), member 3 isoform A ...
728.0 [0..35] [949..1]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLKSIFT CALFVIFVYA TAQSLLKVQE TEARQAYLNV TSSSSSNLSQ DDGHFLSRRL  60
   61 RQVSHGEEGD EGAPSQMDDE LEQMTKVHGE APDAEELREC SEGLVLPLWM PQRNISVGDR 120
  121 LVRGFVYFVL LIYLFVGVSI IADRFM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [147-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAIEAITSIE RAVVVKGPNN TKQVMHVRIW NETVANLTLM ALGSSAPEIL LSVIEIYAKD  60
   61 FESGDLGPGT IVGSAAYNLF MIIAVCMIWI PAGEVRRIRH LRVFFVTALF SVFAYVWLWL 120
  121 ILSVFTPGVI LVWEAIVTLL FFPLTVLWAY IAERRLLVYK YMD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.180456
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNYRVNKRGT VVAGEHDQVE MDAEKGPKQP MVTSARGNDA EAFDEARREY ITLLTELRQK  60
   61 YPDADLEQLE MMAQEQVLAR S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [391-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSRAFYRIQ ATRKMVGSGN LMRKIQERAH SDLTEVKAQL HAGDDEEADD PIRMYFEPGH  60
   61 YTVMENCGEF EVRVVRRGDI STYASVEYET QDGTASAGTD FVGRKGLLSF PPGVDEQRFR 120
  121 IEVIDDDVFE EDECFYIRLF NPSEGVKLAV PMIATVMILD DD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.045757
Match: 2dpkA
Description: No description for 2dpkA was found.

Predicted Domain #5
Region A:
Residues: [553-721]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAGIFAFTDS VFEITESVGR FELKVMRYSG ARGTVIVPYW TENDTATESK DYEGARGELV  60
   61 FENNESEKFI DLFILEESSY EKDVSFKVHI GEPRLAPDDE LAAKIKEVEK KPVQDLTELD 120
  121 RILLLSKPRN GELTTAYVRI RESQEFKATV DKLVAKANVS AVLGTSSWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2fwuA
Description: No description for 2fwuA was found.

Predicted Domain #6
Region A:
Residues: [722-769]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQFKDALTVI PADESEFDND DEEEEVPSCF SYVSHFVCLF WKVLFAFV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [770-950]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTDICGGYV TFVVSIFVIG VITAIIGDAA SYFGCALNIK DSVTAILFVA LGTSIPDTFA  60
   61 SMIAAKHDEG ADNCIGNVTG SNAVNVFLGI GLAWTIAAVY HSSHGMTFNV EPGTIGFAVA 120
  121 LFCGEALIAI MLIMFRRWHK GIGAELGGPK VSKYISAAIL VFLWVFYVVI CILEAYDVIR 180
  181 V

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.677781
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle