| Protein: | CG17838-PE |
| Organism: | Drosophila melanogaster |
| Length: | 571 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17838-PE.
| Description | E-value | Query Range |
Subject Range |
|
|
355.0 | [0..43] | [571..1] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MLSQMEASKV QKDEGGGEAL SRTILKTPSS FRTPSPIPSC SKMAEGNGEL LDDINQKADD 60
61 RGDGERTEDY PKLLEYGLDK KVAGKLDEIY KTGKLAHAEL DERALDALKE FPV
|
| Detection Method: |  |
| Confidence: | 30.522879 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [114-193] |
1 11 21 31 41 51
| | | | | |
1 DGALNVLGQF LESNLEHVSN KSAYLCGVMK TYRQKSRASQ QGVAAPATVK GPDEDKIKKI 60
61 LERTGYTLDV TTGQRKYGGP
|
| Detection Method: | |
| Confidence: | 32.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [194-292] |
1 11 21 31 41 51
| | | | | |
1 PPHWEGNVPG NGCEVFCGKI PKDMYEDELI PLFENCGIIW DLRLMMDPMT GTNRGYAFVT 60
61 FTNREAAVNA VRQLDNHEIK PGKCLKINIS VPNLRLFVG
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 2dguA |
| Description: | No description for 2dguA was found. |
|
Region A: Residues: [293-456] |
1 11 21 31 41 51
| | | | | |
1 NIPKSKGKDE ILEEFGKLTA GLYEVIIYSS PDDKKKNRGF CFLEYESHKA ASLAKRRLGT 60
61 GRIKVWGCDI IVDWADPQEE PDEQTMSKVK VLYVRNLTQD VSEDKLKEQF EQYGKVERVK 120
121 KIKDYAFIHF EDRDSAVEAM RGLNGKEIGA SNIEVSLAKP PSDK
|
| Detection Method: | |
| Confidence: | 5.34 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.55209579427288 | bayes_pls_golite062009 |
| binding | 2.12674248708253 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64322098035939 | bayes_pls_golite062009 |
| mRNA binding | 1.10126462659919 | bayes_pls_golite062009 |
|
Region A: Residues: [457-571] |
1 11 21 31 41 51
| | | | | |
1 KKKEEILRAR ERRMMQMMQA RPGIVGNLSP THPSIMSLTP MRPGARMPLR TPIPREYVVG 60
61 KRKFDGGHQN PADVKRRYPS GLIGNGGSWG SLPLPQQPLG TNGEQWYMDT FSAWS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
