| Protein: | CG17838-PC |
| Organism: | Drosophila melanogaster |
| Length: | 529 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17838-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..1] | [529..1] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MAEGNGELLD DINQKADDRG DGERTEDYPK LLEYGLDKKV AGKLDEIYKT GKLAHAELDE 60
61 RALDALKE
|
| Detection Method: |  |
| Confidence: | 35.39794 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [69-143] |
1 11 21 31 41 51
| | | | | |
1 FPVDGALNVL GQFLESNLEH VSNKSAYLCG VMKTYRQKSR ASQQGVAAPA TVKGPDEDKI 60
61 KKILERTGYT LDVTT
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [144-255] |
1 11 21 31 41 51
| | | | | |
1 GQRKYGGPPP HWEGNVPGNG CEVFCGKIPK DMYEDELIPL FENCGIIWDL RLMMDPMTGT 60
61 NRGYAFVTFT NREAAVNAVR QLNDFEIRTG KKIGVTISFN NHRLFVGNIP KN
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 2dguA |
| Description: | No description for 2dguA was found. |
|
Region A: Residues: [256-417] |
1 11 21 31 41 51
| | | | | |
1 RDRDELIEEF SKHAPGLYEV IIYSSPDDKK KNRGFCFLEY ESHKAASLAK RRLGTGRIKV 60
61 WGCDIIVDWA DPQEEPDEQT MSKVKVLYVR NLTQDVSEDK LKEQFEQYGK VERVKKIKDY 120
121 AFIHFEDRDS AVEAMRGLNG KEIGASNIEV SLAKPPSDKK KK
|
| Detection Method: | |
| Confidence: | 5.38 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.55209579427288 | bayes_pls_golite062009 |
| binding | 2.12674248708253 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64322098035939 | bayes_pls_golite062009 |
| mRNA binding | 1.10126462659919 | bayes_pls_golite062009 |
|
Region A: Residues: [418-529] |
1 11 21 31 41 51
| | | | | |
1 EEILRARERR MMQMMQARPG IVGNLSPTHP SIMSLTPMRP GARMPLRTPI PREYVVGKRK 60
61 FDGGHQNPAD VKRRYPSGLI GNGGSWGSLP LPQQPLGTNG EQWYMDTFSA WS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
