| Protein: | VAChT-PA |
| Organism: | Drosophila melanogaster |
| Length: | 578 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAChT-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..6] | [576..4] |
|
Region A: Residues: [1-462] |
1 11 21 31 41 51
| | | | | |
1 MASFQIPVIN LEVREVKDIV WEKIQEPVNQ RRLILVIVSI ALLLDNMLYM VIVPIIPDYL 60
61 REIGSFDDGP TPPPLRDNIT GKIIPVHHDH HGQDSATGIL FASKAIVQLM VNPFSGGLID 120
121 KIGYDLPMMI GLTIMFFSTA VFACGSSYSV LFFARSLQGA GSAFADTAGL AMIADRFTEE 180
181 NERSQALGIA LAFISFGCLV APPFGGALYQ FAGKEVPFLI LALVCLLDGL MLLLVMKPVK 240
241 EAMKQSKDVQ DQVIPIWRLL MDPYIAVCAG ALTMSNVALA FLEPTISLWM EDNMTTDNWK 300
301 IGMVWLPAFF PHVLGVVITV KMARKYPQHQ WLMAAGGLAL EGFSCFIIPF CSGYKMLMLP 360
361 ICVICFGIAL IDTALLPTLG YLVDVRYVSV YGSIYAIADI SYSIAYAVGP IIAGGVVEAI 420
421 GFTALNFLIA FSNLAYVPVL RKLRNIYDFK PFENEANILM QD
|
| Detection Method: |  |
| Confidence: | 40.0 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 1.24937104052238 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.05701989682533 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [463-578] |
1 11 21 31 41 51
| | | | | |
1 PPNKEYQTYV MHDQKPVEGG VKNHLEYGQQ YQQEQETNLD DQQYEYQQQQ QGYQQGYQQD 60
61 QGYQPGYQEQ GGSYAPQGQP RVANPFQQQQ QQQQQQQQQV QSRGPAAPAN PFRQGF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
