YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7988-PA
Organism:	Drosophila melanogaster
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7988-PA.

Description	E-value	Query Range	Subject Range
gi\|148688028, gi... - gi\|82899338\|ref\|XP_906766.1\| PREDICTED: sensitivity to red light reduced homolog isoform 6 [Mus musc...	341.0	[0..7]	[260..38]
gi\|109497535, gi... - gi\|109507777\|ref\|XP_213799.4\| PREDICTED: similar to SRR1-like protein [Rattus norvegicus], gi\|109497...	328.0	[0..7]	[260..55]
SRRD - SRR1 domain containing	325.0	[0..7]	[260..58]
gi\|114685600 - gi\|114685600\|ref\|XP_515044.2\| PREDICTED: similar to OTTHUMP00000028718 [Pan troglodytes]	323.0	[0..7]	[260..44]
gi\|109093689 - gi\|109093689\|ref\|XP_001105303.1\| PREDICTED: hypothetical protein LOC402055 [Macaca mulatta]	322.0	[0..7]	[260..87]
gi\|54639718, gi\|... - gi\|54639718\|gb\|EAL29120.1\| GA20744-PA [Drosophila pseudoobscura], gi\|125778420\|ref\|XP_001359968.1\| G...	306.0	[0..1]	[265..1]
gi\|76634320 - gi\|76634320\|ref\|XP_872325.1\| PREDICTED: similar to SRR1-like protein [Bos taurus]	284.0	[0..7]	[266..52]
gi\|73995378 - gi\|73995378\|ref\|XP_543457.2\| PREDICTED: similar to SRR1-like protein [Canis familiaris]	273.0	[0..32]	[260..16]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSGEDFQV VTRKKWMARK CLRRRDRHKS ESDYLIDCPD VNVEKFQPRL ENLCTEMCQS  60
   61 DYFLVAMEAL QQQLEGI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKPLERIVCL GLGPFSRTYH ALHQAAFVIG LHRHHKIREA LYFDPVFRDS EKELIRLFDG  60
   61 CIMSKDCA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.638272
Match:	PF07985.3
Description:	No description for PF07985.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [146-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKHEATVPTL YYLPHCPYAL MHNILWSNWK RETLPNVFLI SNSFEMLTMT PRNQDDHITR  60
   61 IVEHCTETPL EDDYEHHNVF NDLSLHTFPQ ESLPGSNDEA FWTRCAPLKV NEDELITETE 120
  121 TSLAALKLES E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits