| Protein: | sr-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1186 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sr-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
852.0 | [0..344] | [1185..383] |
|
Region A: Residues: [1-491] |
1 11 21 31 41 51
| | | | | |
1 MLLTMRRQNE LIVGSQQHPS ATSSASSSAG ATSSPGLSGQ NLNLVAGAGA ATNSTSANSQ 60
61 DSLNTPTTPL LGLSRNPLQF APPPAPPIAV PNPAASGPTF GYYQTVNAAP PIHHSPAATS 120
121 EVSTAPQPPV ELDEYVDILQ VQQLLLDSSA AAAAAANNPP TTEQSVQQPQ QNTVVQPHPH 180
181 QQQQQQQQQQ QPQQQQQQPQ QILAKPRPRI NLQKATEYAA QLAQAESSSP GSRRVLLDYP 240
241 SPYLYGNPYH HHTPPGEDLV ALWFGSNGTG GVAPGTPSAA MIMEGLETLV APTHHAFLLT 300
301 ETAAAAHFNV LSFDTCLFKT STAAQSSGSP STATYLSPAQ FGGSHHGGAS TSSNSLNSSS 360
361 TASSSSTSSS LLHYTTASAA AAAAAAAAAS ANNSVLRARN QTATPTQGGS PGHVAVQPSA 420
421 TASSGRSSAS HLSLLNTSGQ HSPTSSAVEQ VEAHKQLIEA LPGDLNTPVT TSSDIPSFFG 480
481 PTTVVEPPPI T
|
| Detection Method: |  |
| Confidence: | 2.1 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [492-646] |
1 11 21 31 41 51
| | | | | |
1 GSIESEDLSL EPQVISVASP VLSHCSPLKE ERSTPPALAI VKEESSNNSC NMYPQHNNNN 60
61 NNNNNTTSSS TTTTSKQTTS ESNTECVGSP GNHTQSHQQQ QQQLQHNNTS SSNSNCHHSH 120
121 QQQQQQQQQQ HMSSPQQQYQ QHQILHQQQQ LPNHH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [647-761] |
1 11 21 31 41 51
| | | | | |
1 HHHHHHHHHH SQLQQLQQQQ QQQQQQQQHQ QQPLHQQQQL QHQQQQQHHQ QHYQQHAIQH 60
61 QQSQQQASKI SYRGIFTTTG NAMNAAAAAA AAAAQQQHQQ QQQHQQQLPS PQLGV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [762-952] |
1 11 21 31 41 51
| | | | | |
1 LAGPMSPPSN SLGNSWGLPS PDKTMFQPPL FSLPAHYATM QQQQQQQQQQ QQQQQQQQAA 60
61 GAAPSPYDDG RAAAAAAAQH AELLGLTMDC TPLLLKQPPP SYAGASAGFP GLGDLHSSHE 120
121 QQLQQQQYVR SQPKYQWLDS PADYAQQQQQ VQQVQQQQQQ QQTLVLPGPT SSASSSNAAL 180
181 GVLIPKQENY P
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [953-1186] |
1 11 21 31 41 51
| | | | | |
1 DMQPSSNGTG YSGGSGGSSA AAAAAAAAAA AAVQLAEYSP STSKGHEILS QVYQQSTVPL 60
61 KLVPVKPRKY PNRPSKTPVH ERPYACPVEN CDRRFSRSDE LTRHIRIHTG QKPFQCRICM 120
121 RSFSRSDHLT THIRTHTGEK PFSCDICGRK FARSDEKKRH AKVHLKQRIK KEKVRGEQQQ 180
181 QQQQQQQQQQ QQQQQQLQQQ QEQHHLSLQQ HQQYQQHHLL HSADLAIVTS SASM
|
| Detection Method: | |
| Confidence: | 62.30103 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
