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View Structure Prediction Details

Protein: kuk-PB, FBpp0297...
Organism: Drosophila melanogaster
Length: 570 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kuk-PB, FBpp0297....

Description E-value Query
Range
Subject
Range
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
231.0 [0..1] [555..3]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKMASNTS GGGGTTSGTG TGRRLPLSLS GGSTVTRLQQ SSGSNGRSNS PQNGNKKITE  60
   61 SFLPVKKSNQ PRTTSTGSTG SSQNGVSKPT NGKDKSQNGS STGKDQKVEK SKDKLPEKKA 120
  121 KEVGAENKDK DGAAEMTDME VVVENKQKEV VSENK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNEVVSENKE VVSENKEVVS ENKEVASEKK VVVAEVPSDK DDNGETKKDD ATVESTAPAS  60
   61 QTPADAAVII DEVVFIPDLS TPTKDRKSTR KSGSQQKSPI SKASNASPVQ KIKTEAVSSS 120
  121 TSGSLTPQED VDMEPLQVDA SPIRSVHGNL NAVPTATSTP GRSLFSFRGS NKQSTEVELA 180
  181 AQTSSSPAGT PARTFAQISG RRSIRPIDSL TPSKIGTYRC GNSDLDTSNC TNAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [390-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATVGSEIP NSSSFSFSFF GRGRKRERTP PPLTASQSTS DLGHDVDMSP PKRARFDLFS  60
   61 LNLASPFSLL RSRFSKATIG TPTRLRLEPN SSGVEEQHLN TSTTGVPEEV DVEEEQPAED 120
  121 VTVGQEAGAE EIPAKKDVED KNVNGQDGDK ESSDGENIDP VVEVADVAAV AAEGRSICSI 180
  181 M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle