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View Structure Prediction Details

Protein: Ubx-PA
Organism: Drosophila melanogaster
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ubx-PA.

Description E-value Query
Range
Subject
Range
gi|969086 - gi|969086|gb|AAA84412.1| UBXIB
205.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYFEQASG FYGHPHQATG MAMGSGGHHD QTASAAAAAY RGFPLSLGMS PYANHHLQRT  60
   61 TQDSPYDASI TAACNKIYGD GAGAYKQDCL NIKADAVNGY KDIWNTGGSN GGGGGGGGGG 120
  121 GGGAGGTGGA GNANGGNAAN ANGQNNPAGG MPVRPSACTP DSRVGGYLDT SGGSPVSHRG 180
  181 GSAGGNVSVS GGNGNAGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQSGVGVAGA GTAWNANCTI SGAAAQTAAA SSLHQASNHT FYPWMAIAGE CPEDPTKSKI  60
   61 RSDLTQYGGI STDMGKRYSE SLAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLLPDWLGTN GLRRRGRQTY TRYQTLELEK EFHTNHYLTR RRRIEMAHAL CLTERQIKIW  60
   61 FQNRRMKLKK EIQAIKELNE QEKQAQAQKA AAAAAAAAAV QGGHLDQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1b8iA
Description: Ultrabithorax (ubx) homeodomain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle