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View Structure Prediction Details

Protein: Ubx-PA
Organism: Drosophila melanogaster
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ubx-PA.

Description E-value Query
Range
Subject
Range
gi|969086 - gi|969086|gb|AAA84412.1| UBXIB
205.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYFEQASG FYGHPHQATG MAMGSGGHHD QTASAAAAAY RGFPLSLGMS PYANHHLQRT  60
   61 TQDSPYDASI TAACNKIYGD GAGAYKQDCL NIKADAVNGY KDIWNTGGSN GGGGGGGGGG 120
  121 GGGAGGTGGA GNANGGNAAN ANGQNNPAGG MPVRPSACTP DSRVGGYLDT SGGSPVSHRG 180
  181 GSAGGNVSVS GGNGNAGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQSGVGVAGA GTAWNANCTI SGAAAQTAAA SSLHQASNHT FYPWMAIAGE CPEDPTKSKI  60
   61 RSDLTQYGGI STDMGKRYSE SLAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLLPDWLGTN GLRRRGRQTY TRYQTLELEK EFHTNHYLTR RRRIEMAHAL CLTERQIKIW  60
   61 FQNRRMKLKK EIQAIKELNE QEKQAQAQKA AAAAAAAAAV QGGHLDQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1b8iA
Description: Ultrabithorax (ubx) homeodomain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle