YRC Public Data Repository - Protein Structure Prediction

Protein:	Bin1-PA
Organism:	Drosophila melanogaster
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Bin1-PA.

Description	E-value	Query Range	Subject Range
gi\|17944943 - gi\|17944943\|gb\|AAL48535.1\| RE02417p [Drosophila melanogaster]	271.0	[0..1]	[150..1]
gi\|125777721\|ref... - GA19319-PA [Drosophila pseudoobscura], GA19319 [Drosophila pseudoobscura pseudoobscura] gi\|54639454, gi\|... - gi\|54639454\|gb\|EAL28856.1\| GA19319 [Drosophila pseudoobscura pseudoobscura], gi\|125777721\|ref\|XP_001...	265.0	[0..1]	[150..1]
SAP18_BOVIN - Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	246.0	[0..4]	[150..3]
gi\|21410831 - gi\|21410831\|gb\|AAH30836.1\| Sin3A-associated protein, 18kDa [Homo sapiens] gi\|167773709 - gi\|167773709\|gb\|ABZ92289.1\| Sin3A-associated protein, 18kDa [synthetic construct]	246.0	[0..4]	[150..3]
tr\|M3W6Y5\|M3W6Y5... - Sin3A associated protein 18 OS=Felis catus GN=SAP18 PE=4 SV=1 gi\|73993530 - gi\|73993530\|ref\|XP_534536.2\| PREDICTED: similar to sin3 associated polypeptide p18 [Canis familiaris...	245.0	[0..4]	[150..22]
SAP18_MOUSE - Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1 gi\|75773239, gi\|... - gi\|76096316\|ref\|NP_001028857.1\| sin3-associated polypeptide, 18kDa [Rattus norvegicus], gi\|75773239\|...	245.0	[0..4]	[150..3]
gi\|37589667, gi\|... - gi\|41152291\|ref\|NP_957014.1\| sin3-associated polypeptide [Danio rerio], gi\|37589667\|gb\|AAH59482.1\| S...	243.0	[0..4]	[150..3]
gi\|134023791, gi... - gi\|89268231\|emb\|CAJ82462.1\| sin3-associated polypeptide, 18kDa [Xenopus tropicalis], gi\|89267930\|emb...	243.0	[0..4]	[150..3]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVESMIVE EKTQVKQIDR EKTCPMLLRV FCSTGRHHSV SEYMFGNVPT NELQIYTWQD  60
   61 ATLHELTSLV RDVNPDTRKK GTYFDFAVVY PNFRSNHFQM REIGVTCTGQ KGIDDNKTLA 120
  121 QAKFSIGDFL DISITPPNRL PPTARRQRPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.30103
Match:	2hdeA
Description:	No description for 2hdeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits