YRC Public Data Repository - Protein Structure Prediction

Protein:	CycC-PA
Organism:	Drosophila melanogaster
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CycC-PA.

Description	E-value	Query Range	Subject Range
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	237.0	[0..2]	[261..180]
gi\|7438501, gi\|4... - pir\|\|T10526 cyclin B1c-ll - yellow lupine, gi\|4884728\|gb\|AAD31790.1\|AF126107_1 mitotic cyclin B1-3 [...	237.0	[0..9]	[262..191]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1	235.0	[0..4]	[262..188]
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	232.0	[0..8]	[262..271]
gi\|89111295 - gi\|89111295\|dbj\|BAE80322.1\| cyclin B [Camellia sinensis]	231.0	[0..9]	[261..177]
gi\|1752809 - gi\|1752809\|dbj\|BAA14010.1\| cyclin A [Asterina pectinifera]	230.0	[0..2]	[265..188]
gi\|6093215 - gi\|6093215\|emb\|CAB58998.1\| CYCB1-1 protein [Petunia x hybrida]	229.0	[0..9]	[261..172]
gi\|84579363 - gi\|84579363\|dbj\|BAE72070.1\| Cyclin B1-2 [Daucus carota]	228.0	[0..4]	[261..194]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNFWQSSH SQQWILDKPD LLRERQHDLL ALNEDEYQKV FIFFANVIQV LGEQLKLRQQ  60
   61 VIATATVYFK RFYARNSLKN IDPLLLAPTC ILLASKVEEF GVISNSRLIS ICQSAIKTKF 120
  121 SYAYAQEFPY RTNHILECEF YLLENLDCCL IVYQPYRPLL QLVQDMGQED QLLTLSWRIV 180
  181 NDSLRTDVCL LYPPYQIAIA CLQIACVILQ KDATKQWFAE LNVDLDKVQE IVRAIVNLYE 240
  241 LWKDWKEKDE IQMLLSKIPK PKPPPQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	2b9rA
Description:	No description for 2b9rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits