YRC Public Data Repository - Protein Structure Prediction

Protein:	Spc25-PA
Organism:	Drosophila melanogaster
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Spc25-PA.

Description	E-value	Query Range	Subject Range
gi\|51950600 - gi\|51950600\|gb\|AAU15000.1\| Mitch [Drosophila simulans]	387.0	[0..1]	[221..1]
gi\|51950604 - gi\|51950604\|gb\|AAU15002.1\| Mitch [Drosophila sechellia]	387.0	[0..1]	[221..1]
SPC25_DROMA - Kinetochore protein Spc25 OS=Drosophila mauritiana GN=Spc25 PE=3 SV=1	386.0	[0..1]	[221..1]
SPC25_DROTE - Kinetochore protein Spc25 OS=Drosophila teissieri GN=Spc25 PE=3 SV=1	359.0	[0..1]	[221..1]
gi\|51950606 - gi\|51950606\|gb\|AAU15003.1\| Mitch [Drosophila yakuba]	357.0	[0..1]	[221..1]
SPC25_DROER - Kinetochore protein Spc25 OS=Drosophila erecta GN=Spc25 PE=3 SV=1	350.0	[0..1]	[220..1]
SPC25_DROOR - Kinetochore protein Spc25 OS=Drosophila orena GN=Spc25 PE=3 SV=1	349.0	[0..1]	[220..1]
SPC25_DROEU - Kinetochore protein Spc25 OS=Drosophila eugracilis GN=Spc25 PE=3 SV=1	308.0	[0..1]	[218..1]
SPC25_DROLT - Kinetochore protein Spc25 OS=Drosophila lutescens GN=Spc25 PE=3 SV=1	293.0	[0..1]	[221..1]
gi\|125774511, gi... - gi\|72538627\|gb\|EAL27655.2\| GA20206-PA [Drosophila pseudoobscura], gi\|125774511\|ref\|XP_001358514.1\| G...	86.0	[0..8]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIMTESSY ERRVKALYEK QIHMEALEAK FIKKVFKFNS NLLDVKEAAS RHQRKVGKLQ  60
   61 KVLMERREEL DKRVSFIEEL DRELEATKLH NLAMKDWFKQ QKMLAKQRKN EIMESIHTLS 120
  121 KTTRTYINQE ALPARVKGVT VLRGDKRDQL IPFDLKATDV EGLDSLCQHL ESLNVDVAQW 180
  181 QQLISLAMDM AMESRAPTTP PKEADNCKSI IEIDLTSPMS HT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.59
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits