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View Structure Prediction Details

Protein: Tk-PA
Organism: Drosophila melanogaster
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tk-PA.

Description E-value Query
Range
Subject
Range
gi|17945496 - gi|17945496|gb|AAL48801.1| RE23085p [Drosophila melanogaster]
411.0 [0..1] [289..1]
gi|125777054, gi... - gi|54639223|gb|EAL28625.1| GA13208-PA [Drosophila pseudoobscura], gi|125777054|ref|XP_001359479.1| G...
255.0 [0..25] [285..27]
gi|30424445 - gi|30424445|dbj|BAC76399.1| preprotachykinin [Apis mellifera]
205.0 [0..40] [284..18]
gi|40645512 - gi|40645512|dbj|BAD06362.1| preprotachykinin A [Panulirus interruptus]
180.0 [0..40] [282..22]
gi|34327932, gi|... - gi|34327934|dbj|BAC82427.1| preprotachykinin [Procambarus clarkii], gi|34327932|dbj|BAC82426.1| prep...
177.0 [0..41] [282..23]
gi|4730815, gi|7... - pir||JC7108 urechistachykinin II precursor - echiuroid worm (Urechis unicinctus), gi|4730815|dbj|BA...
153.0 [0..63] [208..73]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLSGLIAL ALLLLLLLTA PSSAADTETE SSGSPLTPGA EEPRRVVKRA PTSSFIGMRG  60
   61 KKDEEHDTSE GNWLGSGPDP LDYADEEADS SYAENGRRLK KAPLAFVGLR GKKFIPINNR 120
  121 LSDVLQSLEE ERLRDSLLQD FFDRVAGRDG SAVGKRAPTG FTGMRGKRPA LLAGDDDAEA 180
  181 DEATELQQKR APVNSFVGMR GKKDVSHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYKRAALSDS YDLRGKQQRF ADFNSKFVAV RGKKSDLEGN GVGIGDDHEQ ALVHPWLYLW  60
   61 GEKRAPNGFL GMRGKRPALF E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle