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View Structure Prediction Details

Protein: Tk-PA
Organism: Drosophila melanogaster
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tk-PA.

Description E-value Query
Range
Subject
Range
gi|17945496 - gi|17945496|gb|AAL48801.1| RE23085p [Drosophila melanogaster]
411.0 [0..1] [289..1]
gi|125777054, gi... - gi|54639223|gb|EAL28625.1| GA13208-PA [Drosophila pseudoobscura], gi|125777054|ref|XP_001359479.1| G...
255.0 [0..25] [285..27]
gi|30424445 - gi|30424445|dbj|BAC76399.1| preprotachykinin [Apis mellifera]
205.0 [0..40] [284..18]
gi|40645512 - gi|40645512|dbj|BAD06362.1| preprotachykinin A [Panulirus interruptus]
180.0 [0..40] [282..22]
gi|34327932, gi|... - gi|34327934|dbj|BAC82427.1| preprotachykinin [Procambarus clarkii], gi|34327932|dbj|BAC82426.1| prep...
177.0 [0..41] [282..23]
gi|4730815, gi|7... - pir||JC7108 urechistachykinin II precursor - echiuroid worm (Urechis unicinctus), gi|4730815|dbj|BA...
153.0 [0..63] [208..73]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLSGLIAL ALLLLLLLTA PSSAADTETE SSGSPLTPGA EEPRRVVKRA PTSSFIGMRG  60
   61 KKDEEHDTSE GNWLGSGPDP LDYADEEADS SYAENGRRLK KAPLAFVGLR GKKFIPINNR 120
  121 LSDVLQSLEE ERLRDSLLQD FFDRVAGRDG SAVGKRAPTG FTGMRGKRPA LLAGDDDAEA 180
  181 DEATELQQKR APVNSFVGMR GKKDVSHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYKRAALSDS YDLRGKQQRF ADFNSKFVAV RGKKSDLEGN GVGIGDDHEQ ALVHPWLYLW  60
   61 GEKRAPNGFL GMRGKRPALF E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.536 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.490 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.468 d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.443 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.435 d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.415 a.74.1 Cyclin-like
View Download 0.413 d.58.48 MTH1187-like
View Download 0.408 a.74.1 Cyclin-like
View Download 0.380 a.39.1 EF-hand
View Download 0.356 d.58.25 Killer toxin KP6 alpha-subunit


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle