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View Structure Prediction Details

Protein: CoVa-PB, FBpp030...
Organism: Drosophila melanogaster
Length: 149 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CoVa-PB, FBpp030....

Description E-value Query
Range		 Subject
Range
gi|32815853, gi|... - gi|32815853|gb|AAP88305.1| cytochrome c oxidase polypeptide Va [Drosophila simulans], gi|124014068|g...
 251.0 [0..1] [149..1]
gi|1653983 - gi|1653983|emb|CAA70286.1| cytochrome c oxidase subunit Va preprotein [Drosophila melanogaster]
 250.0 [0..1] [149..1]
gi|54639394, gi|... - gi|54639394|gb|EAL28796.1| GA13206-PA [Drosophila pseudoobscura], gi|125777552|ref|XP_001359646.1| G...
 235.0 [0..1] [148..1]
AGAP011159-PA - cytochrome c oxidase subunit Va precursor|protein_coding|3L:18111843:18112304:-1|gene:AGAP011159
gi|116131706, gi... - gi|119113263|ref|XP_309490.3| AGAP011159-PA [Anopheles gambiae str. PEST], gi|116131706|gb|EAA05128....
 231.0 [0..1] [148..1]
gi|16306441 - gi|16306441|gb|AAL17607.1|AF420467_1 cytochrome c oxidase subunit Va [Rhyzopertha dominica]
 231.0 [0..1] [148..1]
gi|164448662, gi... - gi|87248477|gb|ABD36291.1| cytochrome c oxidase subunit Va [Bombyx mori], gi|164448662|ref|NP_001106...
 228.0 [0..1] [147..1]
COX5A_MOUSE, COX... - (P12787) Cytochrome c oxidase polypeptide Va, mitochondrial precursor (EC 1.9.3.1), Cytochrome c oxi...
 225.0 [0..1] [138..1]
COX5A_MACMU - Cytochrome c oxidase subunit 5A, mitochondrial OS=Macaca mulatta GN=COX5A PE=2 SV=1
 224.0 [0..1] [138..1]
COX5A_BOVIN - Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus GN=COX5A PE=1 SV=2
 224.0 [0..1] [138..1]

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Predicted Domain #1
Region A:
Residues: [1-149] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSITARNLA SALRSSLVGT SSRVAAVRCL HGTEESAEEF DKRYEKYFSR EGIDGWEIRK  60
   61 GMNDLLGMDL VPSPKIIEAG LRASRRVNDI ALAIRWLEGC KDKCGDQKAT LYPYLLEKIT 120
  121 PTLQELGIPT IEELGYDKPE LALKSVYDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.0
Match: 1occE
Description: Cytochrome c oxidase subunit E
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 13.5907467824992 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 13.5907467824992 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 13.5907467824992 bayes_pls_golite062009
heme-copper terminal oxidase activity 13.2768834037467 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 7.11269745957917 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 6.95782581983891 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 6.3444074949287 bayes_pls_golite062009
cation transmembrane transporter activity 6.0779545597528 bayes_pls_golite062009
oxidoreductase activity 6.07124287051458 bayes_pls_golite062009
ion transmembrane transporter activity 5.87041225771312 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.44223516926039 bayes_pls_golite062009
substrate-specific transporter activity 5.2274118132466 bayes_pls_golite062009
electron carrier activity 1.73787331766336 bayes_pls_golite062009
catalytic activity 1.17990683373825 bayes_pls_golite062009
transporter activity 0.0449232084165001 bayes_pls_golite062009
transmembrane transporter activity 0.0241192035901199 bayes_pls_golite062009
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