| Protein: | Scm-PA, FBpp0297150 |
| Organism: | Drosophila melanogaster |
| Length: | 877 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scm-PA, FBpp0297150.
| Description | E-value | Query Range |
Subject Range |
|
|
576.0 | [0..31] | [874..57] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MSGGRDSSTS SGSNSAAPGA STNATSSASA SASSTSTSAS PGSTTSPAST QRQRGRPAKR 60
61 ATCTWCGEGK LPLQYVLPTQ TGKKEFCSET CIAEFRKAYS KGACTQCDNV IRDGAPNKEF 120
121 CSIMCMNKHQ KKNCSTRHSG GSASGKGLAE SERKLLAS
|
| Detection Method: |  |
| Confidence: | 3.64 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [159-382] |
1 11 21 31 41 51
| | | | | |
1 GAPAPTGPFQ YESFHVFDWD AYLEETGSEA APAKCFKQAQ NPPNNDFKIG MKLEALDPRN 60
61 VTSTCIATVV GVLGSRLRLR LDGSDSQNDF WRLVDSTEIH AIGHCEKNGG MLQPPLGFRM 120
121 NASSWPGYLC KILNNAMVAP EEIFQPEPPE PEENLFKVGQ KLEAVDKKNP QLICCATVDA 180
181 IKDDQIHVTF DGWRGAFDYW CNYRSRDIFP AGWCARSCHP MQPP
|
| Detection Method: | |
| Confidence: | 93.045757 |
| Match: | 2bivA |
| Description: | CRYSTAL STRUCTURE OF THE WILD-TYPE MBT DOMAINS OF HUMAN SCML2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [383-547] |
1 11 21 31 41 51
| | | | | |
1 GHKSRMDSSS SKQRCPRPRY TVVAESEAMV PASPATAHFH PNCKGGPFIN NSKLPCMVTG 60
61 PTYQTLAKLC LQEVLAASTD TQQLSKLLFA LEGDVHIVTA AGKNFTVKIP SPMRMKDDES 120
121 LAQFIETLCT TCRACANLIS LVHETEECKK CANSRKRQLT QSATP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [548-801] |
1 11 21 31 41 51
| | | | | |
1 PSSPVLADKR NRQSNSATTS PSEKIIKQEL AVKSPVESKS KTSTNNGKEP ASQQNSNHSL 60
61 NNNNNSASKS SNKVVIKSEP NGANAQTSST TQALRKVRFQ HHANTNTNSS ATNGNQDTSQ 120
121 TTHVSTSHCS SSSTSSSTSL AGGSANTSTI GKYLAPLVAE VHPEQANVKP SNSYYKSPTT 180
181 LSSSASLPTS VSTPFTGCQS ASSTALAAGG VTAAKAATAP AGAAATAGAS PSYTAITSPV 240
241 STPTSALANS HLRS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [802-877] |
1 11 21 31 41 51
| | | | | |
1 QPIDWTIEEV IQYIESNDNS LAVHGDLFRK HEIDGKALLL LNSEMMMKYM GLKLGPALKI 60
61 CNLVNKVNGR RNNLAL
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 1pk3A |
| Description: | Scm SAM domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.32682088990761 | bayes_pls_golite062009 |
| transcription regulator activity | 3.30659353957398 | bayes_pls_golite062009 |
| DNA binding | 2.70497733333132 | bayes_pls_golite062009 |
| nucleic acid binding | 2.37622955739691 | bayes_pls_golite062009 |
| transcription factor activity | 2.23426547892206 | bayes_pls_golite062009 |
| protein binding | 2.12913758162323 | bayes_pls_golite062009 |
| transcription repressor activity | 1.70062739321673 | bayes_pls_golite062009 |
| chromatin binding | 0.807569304631599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.407335178205755 | bayes_pls_golite062009 |
| catalytic activity | 0.0451617952658021 | bayes_pls_golite062009 |
