YRC Public Data Repository - Protein Structure Prediction

Protein:	CG18193-PA
Organism:	Drosophila melanogaster
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18193-PA.

Description	E-value	Query Range	Subject Range
gi\|124014210, gi... - gi\|32815871\|gb\|AAP88312.1\| cytochrome c oxidase polypeptide VIIa [Drosophila simulans], gi\|124014210...	151.0	[0..1]	[106..1]
gi\|32815901 - gi\|32815901\|gb\|AAP88323.1\| cytochrome c oxidase polypeptide VIIa [Drosophila mauritiana]	147.0	[0..1]	[106..1]
CX7A1_BOVIN - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Bos taurus GN=COX7A1 PE=1 SV=2	116.0	[0..25]	[100..1]
CX7A1_PIG - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Sus scrofa GN=COX7A1 PE=3 SV=1	115.0	[0..25]	[100..1]
gi\|56609206 - gi\|56609206\|gb\|AAW03192.1\| mitochondrial cytochrome c oxidase subunit 7AH [Tarsius syrichta]	112.0	[0..25]	[100..1]
gi\|119569131, gi... - gi\|56203513\|emb\|CAI19899.1\| cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Homo sapiens], ...	111.0	[0..28]	[100..34]
gi\|60652707, gi\|... - gi\|60652709\|gb\|AAX29049.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi...	111.0	[0..25]	[100..1]
CX7A2_MOUSE - Cytochrome c oxidase subunit 7A2, mitochondrial OS=Mus musculus GN=Cox7a2 PE=1 SV=2	111.0	[0..28]	[100..2]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRNCFSLRP FLRGVGDVGA VCKPIREFRN SAALKYAAAA AAAPKTRPGK VPPKMVKLRK  60
   61 QFQADNDLPI FLKGGSMDNI LYRLTWVLCF LGIGGDVWLW LGYIIA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.37
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	11.1661924825652	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	11.1661924825652	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	11.1661924825652	bayes_pls_golite062009
heme-copper terminal oxidase activity	10.8704048221392	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.8561013660647	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.71608270579176	bayes_pls_golite062009
oxidoreductase activity	4.44462110749969	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.17458725658827	bayes_pls_golite062009
cation transmembrane transporter activity	3.98660455745725	bayes_pls_golite062009
ion transmembrane transporter activity	3.8169282383307	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.45720620085415	bayes_pls_golite062009
substrate-specific transporter activity	3.29907898458423	bayes_pls_golite062009
catalytic activity	0.300629493270266	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: