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View Structure Prediction Details

Protein: FBpp0308676, DNA...
Organism: Drosophila melanogaster
Length: 737 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308676, DNA....

Description E-value Query
Range
Subject
Range
POLK_MOUSE - DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
468.0 [0..3] [734..88]

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Predicted Domain #1
Region A:
Residues: [1-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFASVLGKS EAHQRTIIHL DMDYFYAQVE EIRDPTLRSK ALGIQQKNIV VTCNYVARAK  60
   61 GVTKLMLIAE AQRICPDLVL VNGEDLAPYR QMSQRIFDLL LNYTPLVEKL GFDENFMDVT 120
  121 ALVELRQAHV AEALLRPPVG HTYPADGTPL SNCDCGCAQR LAIGTRIAQE IREELKLRLG 180
  181 ITCCAGIAYN KLLAKLVGSS HEPNQQTVLV STYAEQFMRE LGDLKRVTGI GQKTQCLLLE 240
  241 AGMSSVEQLQ QCDMDVMRKK FGFETATRLR DLAFGRDTSL VRPSGKPKTI GMEDACKPIS 300
  301 VRTDVEERFR MLLKRLVEQV AEDGRVPIAI KVVLRKFDSQ KKSSHRETKQ ANILPSLFKT 360
  361 SMCPGETGVS KVQLADGAQD KLLKIVMRLF ERIVDMSKPF NITLLGLAFS KFQERKVGSS 420
  421 SIANFLIKKA DLEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.0
Match: 2dpiA
Description: No description for 2dpiA was found.

Predicted functions:

Term Confidence Notes
DNA-directed DNA polymerase activity 4.38129837827821 bayes_pls_golite062009
DNA polymerase activity 4.37339889806547 bayes_pls_golite062009
nucleotidyltransferase activity 3.39575274291906 bayes_pls_golite062009
catalytic activity 1.41943047378765 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.03192827597738 bayes_pls_golite062009
transferase activity 0.98512909175458 bayes_pls_golite062009
DNA primase activity 0.6264375547938 bayes_pls_golite062009
exonuclease activity 0.20278066435985 bayes_pls_golite062009
nucleic acid binding 0.00586413250727191 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [435-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSITSLTNTS LTSPTAESPT SDECAFRSSP TTFKPSDQFY RRRATTASPV PMLLDNGSES  60
   61 AATNSDFSDF SETEVEPSPK KSRIGRLLVS KRSRLAADVG DSAAEVASPS KLRVCDLRLN 120
  121 SRDSEKDFPM STTPSTSTSA PAPRFRTVQP PNTLLQRIDG SLRFVTTRTA SRLSSNASST 180
  181 ASSPLPSPMD DSIAMSAPST TTLPFPSPTT TAVVTSSSST ATCDALTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [663-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVCPAGVDAE VFKELPVELQ TELIASWRSS LVAAVEQTNG TGAATSAAIA SGAPATATTA  60
   61 SGQKNTLYRY FLRNK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle