YRC Public Data Repository - Protein Structure Prediction

Protein:	Ccp84Ab-PA
Organism:	Drosophila melanogaster
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ccp84Ab-PA.

Description	E-value	Query Range	Subject Range
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	222.0	[0..31]	[217..1679]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	222.0	[0..31]	[217..1672]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	205.0	[0..14]	[218..1486]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	201.0	[0..6]	[217..1491]
gi\|54643878\|gb\|E... - GA13798-PA [Drosophila pseudoobscura], RpII215 [Drosophila pseudoobscura pseudoobscura] gi\|54643878, gi\|... - gi\|54643878\|gb\|EAL32621.1\| RpII215 [Drosophila pseudoobscura pseudoobscura], gi\|125983594\|ref\|XP_001...	188.0	[0..5]	[218..1598]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	184.0	[0..9]	[218..1588]
gi\|7494259 - pir\|\|T18492 hypothetical protein C0805w - malaria parasite (Plasmodium falciparum) gi\|124505021, gi... - gi\|3758846\|emb\|CAB11131.1\| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7], gi\|...	182.0	[0..41]	[218..2160]
gi\|134089267, gi... - gi\|50257749\|gb\|EAL20450.1\| hypothetical protein CNBE3710 [Cryptococcus neoformans var. neoformans B-... gi\|58267574, gi\|... - gi\|58267574\|ref\|XP_570943.1\| DNA-directed RNA polymerase ii largest subunit [Cryptococcus neoformans...	179.0	[0..1]	[217..1531]
gi\|4808162 - gi\|4808162\|emb\|CAB42796.1\| largest subunit of the RNA polymerase II complex [Drosophila madeirensis]	178.0	[0..5]	[218..1598]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKFVFALA FVAVASAGYA PIAAPQVYHA APAVATYAHA PVAVAQKVVV KAAEEYDPHP  60
   61 QYRFSYGVDD KLTGDNKGQV EERDGDVVRG EYSLIDADGY KRTVQYTADP INGFNAVVNR 120
  121 EPLVKAVAVA PVVKTVAAPV AQYAAPAVAH Y

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.677781
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.675	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.625	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.582	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.575	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.569	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

Predicted Domain #2

Region A:
Residues: [152-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPAVVKTVA PVAHYAAPAV VKTVAPVAHY AAPAAYATYA APTHYAAPAH YAAPAATYTS  60
   61 YSAPAVAYHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits