YRC Public Data Repository - Protein Structure Prediction

Protein:	Ccp84Ac-PA
Organism:	Drosophila melanogaster
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ccp84Ac-PA.

Description	E-value	Query Range	Subject Range
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	224.0	[0..29]	[214..1683]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	222.0	[0..36]	[214..1676]
gi\|158332, gi\|279533 - pir\|\|RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) II 215K chain [validated] - fruit fly (Drosophi...	204.0	[0..3]	[217..1648]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	203.0	[0..14]	[217..1485]
gi\|54643878\|gb\|E... - GA13798-PA [Drosophila pseudoobscura], RpII215 [Drosophila pseudoobscura pseudoobscura] gi\|54643878, gi\|... - gi\|54643878\|gb\|EAL32621.1\| RpII215 [Drosophila pseudoobscura pseudoobscura], gi\|125983594\|ref\|XP_001...	198.0	[0..8]	[216..1653]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	197.0	[0..8]	[216..1653]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	186.0	[0..9]	[215..1492]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKLVALVS CCLAAVSAGL IPVEQHDQHP QLYQAHQPQH VIYQKQHEIH PHGHEVYPDD  60
   61 PHPKYNFAYD VQDALSGDSK SQVESRDGDV VQGEYSLDDA DGFRRTVKYT ADSVNGFNAV 120
  121 VHREPLAHVH HK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.522879
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVAAAPVQYH HAPAAAAAVI KSYASPSQAY VAPTYAAPAY TAPAYATHQA EQPQEREHQQ  60
   61 HHYASYESPA HAQAAHEGHE YYHHQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits