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View Structure Prediction Details

Protein: Ccp84Ac-PA
Organism: Drosophila melanogaster
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ccp84Ac-PA.

Description E-value Query
Range
Subject
Range
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
224.0 [0..29] [214..1683]
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
222.0 [0..36] [214..1676]
gi|158332, gi|279533 - pir||RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) II 215K chain [validated] - fruit fly (Drosophi...
204.0 [0..3] [217..1648]
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
203.0 [0..14] [217..1485]
gi|54643878|gb|E... - GA13798-PA [Drosophila pseudoobscura], RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878, gi|... - gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura], gi|125983594|ref|XP_001...
198.0 [0..8] [216..1653]
gi|40217297, gi|... - gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...
197.0 [0..8] [216..1653]
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
186.0 [0..9] [215..1492]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKLVALVS CCLAAVSAGL IPVEQHDQHP QLYQAHQPQH VIYQKQHEIH PHGHEVYPDD  60
   61 PHPKYNFAYD VQDALSGDSK SQVESRDGDV VQGEYSLDDA DGFRRTVKYT ADSVNGFNAV 120
  121 VHREPLAHVH HK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.522879
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.706 N/A N/A d.17.1 Cystatin/monellin
View Download 0.658 N/A N/A b.54.1 Core binding factor beta, CBF
View Download 0.619 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.612 N/A N/A d.17.1 Cystatin/monellin
View Download 0.571 N/A N/A d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Predicted Domain #2
Region A:
Residues: [133-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVAAAPVQYH HAPAAAAAVI KSYASPSQAY VAPTYAAPAY TAPAYATHQA EQPQEREHQQ  60
   61 HHYASYESPA HAQAAHEGHE YYHHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.483 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.298 N/A N/A d.95.2 Homing endonucleases
View Download 0.261 N/A N/A d.226.1 GIY-YIG endonuclease
View Download 0.251 N/A N/A d.45.1 ClpS-like
View Download 0.228 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle