YRC Public Data Repository - Protein Structure Prediction

Protein:	agt-PA
Organism:	Drosophila melanogaster
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for agt-PA.

Description	E-value	Query Range	Subject Range
gi\|71554218, gi\|... - gi\|71733665\|ref\|YP_275444.1\| ADA regulatory protein [Pseudomonas syringae pv. phaseolicola 1448A], g...	204.0	[0..4]	[192..175]
gi\|238726289, gi... - gi\|77977376\|ref\|ZP_00832826.1\| COG2169: Adenosine deaminase [Yersinia intermedia ATCC 29909], gi\|238...	201.0	[0..4]	[190..176]
gi\|63257301, gi\|... - gi\|66046594\|ref\|YP_236435.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Pseudomonas syri...	201.0	[0..4]	[192..191]
gi\|28870755, gi\|... - gi\|28870755\|ref\|NP_793374.1\| Ada regulatory protein [Pseudomonas syringae pv. tomato str. DC3000], g... gi\|213968951, gi... - gi\|213968951\|ref\|ZP_03397091.1\| Ada regulatory protein [Pseudomonas syringae pv. tomato T1], gi\|2139... tr\|Q87Z36\|Q87Z36... - Ada regulatory protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ada PE=4 SV=1	200.0	[0..4]	[189..177]
gi\|77459163, gi\|... - gi\|77459163\|ref\|YP_348669.1\| AraC family transcriptional regulator [Pseudomonas fluorescens Pf0-1], ...	200.0	[0..4]	[190..170]
gi\|254707892 - gi\|254707892\|ref\|ZP_05169720.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella pinniped... gi\|254703729 - gi\|254703729\|ref\|ZP_05165557.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella suis bv.... gi\|25286164 - pir\|\|AH3446 methylated-DNA-[protein]-cysteine S-methyltransferase (EC 2.1.1.63) [imported] - Brucell... gi\|163673378, gi... - gi\|163842655\|ref\|YP_001627059.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Brucella sui... gi\|254701183 - gi\|254701183\|ref\|ZP_05163011.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella suis bv.... gi\|17983570, gi\|... - gi\|17987841\|ref\|NP_540475.1\| ADA regulatory protein / O-6-methylguanine-DNA-alkyltransferase [Brucel... gi\|225851911, gi... - gi\|225851911\|ref\|YP_002732144.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella meliten... gi\|161335159, gi... - gi\|161618348\|ref\|YP_001592235.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Brucella can... gi\|254716588 - gi\|254716588\|ref\|ZP_05178399.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella ceti M13... gi\|254713059 - gi\|254713059\|ref\|ZP_05174870.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella ceti M64... gi\|254709524 - gi\|254709524\|ref\|ZP_05171335.1\| methylated-DNA-protein-cysteine methyltransferase [Brucella pinniped... gi\|148371116, gi... - gi\|148559859\|ref\|YP_001258400.1\| ada regulatory protein [Brucella ovis ATCC 25840], gi\|148371116\|gb\|...	200.0	[0..4]	[190..176]
gi\|186467753, gi... - gi\|23130248\|ref\|ZP_00112065.1\| COG2169: Adenosine deaminase [Nostoc punctiforme PCC 73102], gi\|18668...	199.0	[0..3]	[189..168]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	199.0	[0..23]	[190..1]
gi\|82699284 - gi\|82699284\|ref\|YP_413858.1\| methylated-DNA-protein cysteine S-methyltransferase [Brucella melitensi... gi\|82615385 - gi\|82615385\|emb\|CAJ10354.1\| Helix-turn-helix, AraC type:Methylated-DNA-[protein]-cysteine S-methyltr... gi\|62289359, gi\|... - gi\|62289359\|ref\|YP_221152.1\| Ada, ada regulatory protein [Brucella abortus bv. 1 str. 9-941], gi\|621... gi\|189019185, gi... - gi\|189023613\|ref\|YP_001934381.1\| Ada, ada regulatory protein [Brucella abortus S19], gi\|189019185\|gb... gi\|237789685, gi... - gi\|237814848\|ref\|ZP_04593846.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Brucella abor... gi\|254688676 - gi\|254688676\|ref\|ZP_05151930.1\| Ada, ada regulatory protein [Brucella abortus bv. 6 str. 870] gi\|254696803 - gi\|254696803\|ref\|ZP_05158631.1\| Ada, ada regulatory protein [Brucella abortus bv. 2 str. 86/8/59] gi\|254729710 - gi\|254729710\|ref\|ZP_05188288.1\| Ada, ada regulatory protein [Brucella abortus bv. 4 str. 292]	198.0	[0..4]	[190..176]
gi\|23347159, gi\|... - gi\|23501273\|ref\|NP_697400.1\| ada regulatory protein [Brucella suis 1330], gi\|23347159\|gb\|AAN29315.1\|...	197.0	[0..4]	[190..176]

Back

Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMWIGQNTQ IRLVPLKDPP KTIRYSFLAT KFGQMMMGVI NPISGDSKDQ VAIGVLHFVI  60
   61 KDNVSTYNEV QERWPKSELW KDDDAVKLVA DKLFESDKEN SQAIPIAIYG TDFQLSVWRA 120
  121 LVHMKRGETC TYSQLAERMG RPTAVRAVAS AVAKNELAIL IPCHRVVSQN GASKYHWGAA 180
  181 LKQLLLADEK SKNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.045757
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.9938943760254	bayes_pls_golite062009
S-methyltransferase activity	2.96219931728042	bayes_pls_golite062009
catalytic activity	2.27882522649583	bayes_pls_golite062009
methyltransferase activity	1.63681159093596	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.6341981985862	bayes_pls_golite062009
transferase activity	1.42883081715544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: