YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17919-PA
Organism:	Drosophila melanogaster
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17919-PA.

Description	E-value	Query Range	Subject Range
gi\|108870917, gi... - gi\|157133196\|ref\|XP_001662795.1\| phosphatidylethanolamine-binding protein [Aedes aegypti], gi\|108870...	253.0	[0..17]	[200..27]
gi\|125775312, gi... - gi\|54638646\|gb\|EAL28048.1\| GA10227-PA [Drosophila pseudoobscura], gi\|125775312\|ref\|XP_001358905.1\| G...	243.0	[0..18]	[201..1]
gi\|95102826, gi\|... - gi\|95102826\|gb\|ABF51354.1\| phosphatidylethanolamine binding protein isoform 2 [Bombyx mori], gi\|1537...	241.0	[0..17]	[200..11]
gi\|110763671 - gi\|110763671\|ref\|XP_623194.2\| PREDICTED: similar to CG6180-PA isoform 2 [Apis mellifera]	238.0	[0..18]	[201..26]
gi\|220959062, gi... - gi\|220959062\|gb\|ACL92074.1\| CG10298-PA [synthetic construct], gi\|220949960\|gb\|ACL87523.1\| CG10298-PA... CG10298-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10298 (CG10298, FBgn0037432). It is a prote...	234.0	[0..24]	[201..8]

Back

Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLLPLVG CLLAVQAGSV EEVFRSHQVV PDVIPEPPNQ LLKVTYSNNL VAKDGVELTP  60
   61 TQVKDQPVVE WDAQPGEFYT LIMTDPDAPS RAEPKFREFK HWILANIAGN DLASGEPIAE 120
  121 YIGSGPPQGT GLHRYVFLLY KQSGKLEFDE ERVSKRSRKD RPKFSAAKFA INHELGNPIA 180
  181 GTFYQAQYDD YVPKLHKQLS EN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	1kn3A
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphatidylethanolamine binding	2.39921319648948	bayes_pls_golite062009
binding	1.8997510034028	bayes_pls_golite062009
phospholipid binding	1.70781158126196	bayes_pls_golite062009
lipid binding	1.58605438198908	bayes_pls_golite062009
protein binding	1.4054795148286	bayes_pls_golite062009
receptor binding	1.09518634969861	bayes_pls_golite062009
enzyme inhibitor activity	0.10294346442997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: