YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17917-PA
Organism:	Drosophila melanogaster
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17917-PA.

Description	E-value	Query Range	Subject Range
gi\|108870917, gi... - gi\|157133196\|ref\|XP_001662795.1\| phosphatidylethanolamine-binding protein [Aedes aegypti], gi\|108870...	258.0	[0..9]	[202..17]
gi\|220954556, gi... - gi\|220954556\|gb\|ACL89821.1\| CG6180-PA [synthetic construct], gi\|220944770\|gb\|ACL84928.1\| CG6180-PA [... CG6180-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6180 (CG6180, FBgn0032453). It is a protein...	253.0	[0..3]	[202..58]
gi\|125775312, gi... - gi\|54638646\|gb\|EAL28048.1\| GA10227-PA [Drosophila pseudoobscura], gi\|125775312\|ref\|XP_001358905.1\| G...	247.0	[0..26]	[205..7]
gi\|116117511, gi... - gi\|118791257\|ref\|XP_319656.3\| ENSANGP00000013993 [Anopheles gambiae str. PEST], gi\|116117511\|gb\|EAA1...	239.0	[0..2]	[202..10]
gi\|95102826, gi\|... - gi\|95102826\|gb\|ABF51354.1\| phosphatidylethanolamine binding protein isoform 2 [Bombyx mori], gi\|1537...	238.0	[0..16]	[202..9]
gi\|110763671 - gi\|110763671\|ref\|XP_623194.2\| PREDICTED: similar to CG6180-PA isoform 2 [Apis mellifera]	238.0	[0..20]	[203..26]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAPSLSLK STRGVHQSDT EVSKIMRSLD VIPDVIHIGP QEFLNVTYHG HLAAHCGKVL  60
   61 EPMQVRDEPS VKWPSAPENY YALLMVDPDV PNAITPTHRE FLHWMVLNIP GNLLALGDVR 120
  121 VGYMGATPLK GTGTHRFVFL LYKQRDYTKF DFPKLPKHSV KGRSGFETKR FAKKYRFGHP 180
  181 VAGNFFTSQW SPDVPSLIKA ISHNARQVAH F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1b7aA
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphatidylethanolamine binding	2.39921319648948	bayes_pls_golite062009
binding	1.8997510034028	bayes_pls_golite062009
phospholipid binding	1.70781158126196	bayes_pls_golite062009
lipid binding	1.58605438198908	bayes_pls_golite062009
protein binding	1.4054795148286	bayes_pls_golite062009
receptor binding	1.09518634969861	bayes_pls_golite062009
enzyme inhibitor activity	0.10294346442997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: