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View Structure Prediction Details

Protein: CG31547-PA
Organism: Drosophila melanogaster
Length: 995 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG31547-PA.

Description E-value Query
Range
Subject
Range
gi|3342264, gi|1... - gi|3342264|gb|AAC27557.1| Na-K-Cl cotransporter [Rattus norvegicus], gi|13929130|ref|NP_113986.1| so...
799.0 [0..9] [995..204]

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Predicted Domain #1
Region A:
Residues: [1-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPEAVIVLL PFHQESLPRL DNYRISMRNL KRPSIGELQG EAVDQSITIP EPEPEATGGH  60
   61 IKLGWIVGVL IPCLLNIWGV MLFLRLSWVV AESGILQSLI IITISAVVCV ITTLSLSAIS 120
  121 TNGEVKGGGV YFIISRSLGP EFGASVGVVF AFANAVSASM NTIGFCESLN VLLKNNDLKI 180
  181 VDNGINDIRI VGSITVLVLI LICCVGMEWE TKAQNFLIVT IVLAIFNFLI GAAIGPQGNE 240
  241 EQISRGFVGF SWATLKENFG SDYRYAEGVN HDFFSVFAIF FPSVTGIQAG ANICGDLKDA 300
  301 GAAIPKGTFW SLLISMSSYA LFVLFAGGAA VRDASGIPAD LVNGTIVSSE LPCMATGNCT 360
  361 WGLFNSYEMM QEMSLWGPLI YAGCFAATLS TALTNLLSVP RLVQALGIDQ IYPGLIFFSK 420
  421 PYGKHGEPYR GYVLTFFITT GFLLIGELNL IAPLISTFYL ASYALINFCT FHAAFVKPLG 480
  481 WRPTFKYYNA WLSLFGFAMC VAIMFLINYV AAIITFGIIF ALYLVVMYRK PEANWGSTTQ 540
  541 AQQYKAALMA VHRLQNVSDH VKNYHPQVLV LSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1fftA
Description: Cytochrome O ubiquinol oxidase, subunit I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
monovalent inorganic cation transmembrane transporter activity 6.93719418697328 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 6.67949994760371 bayes_pls_golite062009
cation transmembrane transporter activity 6.50939400533716 bayes_pls_golite062009
ion transmembrane transporter activity 6.40081133240949 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 6.02701109829891 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.9695962563814 bayes_pls_golite062009
transporter activity 4.2806100513341 bayes_pls_golite062009
transmembrane transporter activity 4.19885907933483 bayes_pls_golite062009
substrate-specific transporter activity 4.09889747645813 bayes_pls_golite062009
heme-copper terminal oxidase activity 1.27735515053931 bayes_pls_golite062009
binding 1.11625465832634 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 0.803860393147327 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 0.803860393147327 bayes_pls_golite062009
cytochrome-c oxidase activity 0.803860393147327 bayes_pls_golite062009
active transmembrane transporter activity 0.349031670056176 bayes_pls_golite062009
primary active transmembrane transporter activity 0.336122020727214 bayes_pls_golite062009
protein binding 0.335149649581279 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [574-727]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKTRPPLVD FGYLLTKNNS LMFVANIIPV RVGYKNRQHL VKDGQKYLDA RKIKAFYNVI  60
   61 DGFSLEDGIN ALTKSTGFGK MSPNIVLVGY KPDWNRCRKE EVESYFSILY NAFSQRMGVA 120
  121 LLRLPNGLDF SELSSEVTLP ANGMGHMHTA NAHG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [728-826]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTNELMPAAN AASELLHIDS NLNLASMDSP NSSFTMPQPA PMPNMQRNSR SYKVTSSDEP  60
   61 AVTYHTKGGS DIPQNLLDAM TIFTRKQPKG TIDVFWLYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [827-995]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGGLTILLPY IISMRSHWQN SKLRVFAMCH GKDEEQEEKS MASLLTKFRI KYSELIMLKG  60
   61 VSEQPRADTV LKHKRLIEPF RRGARNEFGI TDDELQSMSE KTNRQLRIHE LVVKHSSNAS 120
  121 LVVMSLPMPR KEAISAPLYM SWLEMLTSDM KCPVALARGN QTPVLTLYS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle