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View Structure Prediction Details

Protein: hd-PA
Organism: Drosophila melanogaster
Length: 568 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hd-PA.

Description E-value Query
Range
Subject
Range
gi|76608066 - gi|76608066|ref|XP_600524.2| PREDICTED: similar to Downstream neighbor of Son protein (B17) [Bos tau...
712.0 [0..6] [567..38]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEASVASK WTRPDDFIKL QRLKQKKNKL AARVSNNNNR RPRHQVDETD KSKLLEAKLA  60
   61 QKRKNPFAKS TADAKKLRVD PQLADLEPVV TASSCFVRET PTRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAKFVLQKY DPQAFAKLFQ HPQINAEDED DAELAARQKH TAHLPVDWSL KTRARFFCPT  60
   61 ELPAIQLKTS QLASGLTSFV RCMDPQRTES TLDISDATRF NQCNYYWQHP HLPWLTLYPR 120
  121 TAKENVGVVV GERERKALAE EW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [247-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFSFRGLFQL LRARQCPYFY LCANTFTVLF RAAGVGGRPE SHALVTPSTR GMRQALRQEG  60
   61 IEFSMPLKSD NSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [320-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAHDNSFNEE STTTSLGPEA GEDAPPPAQE DEDDDEDWLE SLGVDERELR RIQSSHARKQ  60
   61 QAAEMREDFS DNSLLLVDGV ECQGFFSYLL NAKSAISTVG RLAGVPPTLL SPVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [434-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPKATMQHLV PRSKKVRLDG VDYFSIDIKG LILPTFLPSV AELLSETR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [482-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMFSSTLASS INTLAFSKAT QKLLETPETP QSDAEGEDAA GQVFGEQNLS ECGLLPAVVG  60
   61 SICRTGQHAV GLLERVCYQR DEGYAWS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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