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View Structure Prediction Details

Protein: l(3)82Fd-PF
Organism: Drosophila melanogaster
Length: 869 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)82Fd-PF.

Description E-value Query
Range
Subject
Range
l(3)82Fd-PO - The gene l(3)82Fd is referred to in FlyBase by the symbol Dmel\l(3)82Fd (CG32464, FBgn0013576). It i...
480.0 [0..8] [869..164]

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Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTAVFWRNG DILEGLRPGS PKPGHIERVG GSSQQQQAEE EANKSDDPVI TQRFLKINVR  60
   61 HITDGQGVVG GVLLVTPNAV MFDPNVSDPL VIEHGPESYG VIAPMELVVN AAIFHDIAHM 120
  121 RVAGGAGQGL NSASGDAEKP EIYYPKPVLV EEDSKELPEQ QSLLGEDGNK RLDAEIGSLE 180
  181 IADDQESLCS STGRDGDAFP KAFDRERVED SSMEAKDSAK TDALDDEDKK AGLGLSSTRS 240
  241 TLEERRKSLL DHHWAIPSKD RSSEDEGDNE SNVTVDSGAR VQDPHSANSS VSGVPLSQPP 300
  301 VAAAAAAAAV APASAVVPLP PSGIDLEHLE QLSKQSCYDS GIDIREPVPN VQPIPKKTVY 360
  361 SDADIVLSSD WVPPKTIVPT HFSESPPRST ILGQSLDAGT GGAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [405-627]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVRKKTSSVS FSVDDEAAQQ AQAQSAALAV TDKQADKKNK MLKRLSYPLT WVEGLTGEGG  60
   61 AVPPGGVGSG SLNKSGDTDS APNTGDSNQS VFSKVFSRRS SIGTFIRPHS SEGTSSSTKL 120
  121 KEAKQAPKLD YRSMVSMDDK PELFISVDKL IPRPARACLD PPLYLRLRMG KPIGKAIPLP 180
  181 TSVMSYGKNK LRAEYWFSVP KNRVDELYRF INTWVKHLYG ELD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [628-705]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQIKARGFE LIQEDTEWTK SGTTKAGMGG GSQDGEEISD LTRESWEVLS MSTDEYRKTS  60
   61 LFATGSFDLD FPIPDLIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [706-869]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTEILTEEHR EKLCSHLPAR AEGYSWSLIF STSQHGFALN SLYRKMARLE SPVLIVIEDT  60
   61 EHNVFGALTS CSLHVSDHFY GTGESLLYKF NPSFKVFHWT GENMYFIKGN MESLSIGAGD 120
  121 GRFGLWLDGD LNQGRSQQCS TYGNEPLAPQ EDFVIKTLEC WAFV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 75.823909
Match: PF07534.7
Description: No description for PF07534.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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