| Protein: | 5-HT2-PB |
| Organism: | Drosophila melanogaster |
| Length: | 930 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 5-HT2-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
740.0 | [0..1] | [868..1] |
|
Region A: Residues: [1-249] |
1 11 21 31 41 51
| | | | | |
1 MEMQSYSGRG PSTGTSETAT ATAAVASASA SDTAATFTLR HFNCRLEEAD WPGPRQPFID 60
61 CEGSHTNSTS YTPSSLPTSK NLIEGPNNTF QCARQAIDEA EHNAFYSCDG ESPLSENCTL 120
121 RLKARLLRWP YEAYEHIRLA INGALSDYAS DKLSDSSSCD EGGMVLQCKL GQAHELLLCH 180
181 LQQLEREPLR EVGSAEESFS NDSLLQAFQI ELGAERDGLW SFLNLSELME PDHGFLGIMN 240
241 VTNTSLDMF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [250-532] |
1 11 21 31 41 51
| | | | | |
1 LPNLTALNTT STASTADMAT EFAVTKSFLD YSPHGYDFLF LFVVFFIFAG GLGNILVCLA 60
61 VALDRKLQNV TNYFLFSLAI ADLLVSLFVM PMGAIPAFLG YWPLGFTWCN IYVTCDVLAC 120
121 SSSILHMCFI SLGRYMGIRN PLGSRHRSTK RLTGIKIAIV WVMAMMVSSS ITVLGLVNEK 180
181 NIMPEPNICV INNRAFFVFG SLVAFYIPML MMVTTYALTI PLLRKKARFA AEHPESELFR 240
241 RLGGRFTLRP QHSQQQLQMF SSFSGSNNKF LSMGDGNRNF NTE
|
| Detection Method: | |
| Confidence: | 37.0 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [533-930] |
1 11 21 31 41 51
| | | | | |
1 GEMEEGGAPS RRSGVEPAER PLMQQRTASS RSMGTVSFRN VVNGTSGAAG SGRRTTGTAH 60
61 SSFRFSGAGI FRHSSSSPAS SCHSTSTSRS SSFWRKHGGY PNLMDRLAIH LRLSLVPPSS 120
121 HPNRRASVRV TISQPQLGYP TNVGGNGGRT VGATEVGAGG NGSSAGRTSN SSLGGTSLMK 180
181 IATIQGPILN QSQAAGGNHM VQKVKPTALK PEEPQRNKVR PFKFAFNRVA TPTLNLRFLN 240
241 NRSKRNSLSA NAVATEQKAT KVLGLVFFTF VLCWSPFFIL NIIFAACPEC QVPEHVVNTC 300
301 LWLGYVSSTI NPIIYTIFNR TFRAAFIRLL KCNCKRSGRP LRYRSVTEGR GALSLCAPSA 360
361 LPLAISFQGA PLMTPSTANA TPMSEFRASC RTVTDDEC
|
| Detection Method: | |
| Confidence: | 4.44 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
