YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr78E-PA
Organism:	Drosophila melanogaster
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr78E-PA.

Description	E-value	Query Range	Subject Range
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	144.0	[0..31]	[132..78]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	143.0	[0..2]	[136..1]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	138.0	[0..5]	[136..60]
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	138.0	[0..28]	[125..121]
CU17_BOMMO - Larval cuticle protein LCP-17 OS=Bombyx mori GN=LCP17 PE=2 SV=1	134.0	[0..2]	[137..1]
gi\|45445693, gi\|... - gi\|45552587\|ref\|NP_995817.1\| cuticular protein 47Ef, isoform B [Drosophila melanogaster], gi\|4544569...	132.0	[0..19]	[125..119]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKILIVALS LCTAVVLSAP VDHVTSTTQP PVAILESSHE KHEDGSYNFS YLGEDGTHRR  60
   61 EEAVVRNQGT ENEYLEISGS YSYFDANGQE VTVTYKADDH GFVPEGGAIL PQISLAAKQV 120
  121 SEQVPQPDLD YAKPPKV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.356547
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits