YRC Public Data Repository - Protein Structure Prediction

Protein:	Clc-PC, Clc-PA, ...
Organism:	Drosophila melanogaster
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Clc-PC, Clc-PA, ....

Description	E-value	Query Range	Subject Range
gi\|3065729 - gi\|3065729\|gb\|AAC14276.1\| clathrin light chain [Drosophila melanogaster]	198.0	[0..1]	[217..1]
gi\|73971344 - gi\|73971344\|ref\|XP_866787.1\| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...	186.0	[0..4]	[213..20]
gi\|30585415, gi\|... - gi\|60653991\|gb\|AAX29688.1\| clathrin light polypeptide [synthetic construct], gi\|30585415\|gb\|AAP36980...	184.0	[0..4]	[213..20]
gi\|225494, gi\|510 - gi\|510\|emb\|CAA28542.1\| unnamed protein product [Bos taurus], gi\|225494\|prf\|\|1304303B clathrin LCa	184.0	[0..6]	[213..17]
gi\|61362516, gi\|... - gi\|61362522\|gb\|AAX42237.1\| clathrin light polypeptide [synthetic construct], gi\|61362516\|gb\|AAX42236... gi\|158255592, gi... - gi\|4502899\|ref\|NP_001824.1\| clathrin, light polypeptide A isoform a [Homo sapiens], gi\|307118\|gb\|AAA...	183.0	[0..4]	[213..20]
gi\|53733998 - gb\|AAH84012.1\| Unknown (protein for MGC:98180) [Xenopus laevis] gi\|122939192, gi... - gi\|74214691\|dbj\|BAE31185.1\| unnamed protein product [Mus musculus], gi\|74213812\|dbj\|BAE29342.1\| unna...	183.0	[0..4]	[213..20]
gi\|149045786, gi... - gi\|56269651\|gb\|AAH87577.1\| Clta protein [Rattus norvegicus], gi\|203278\|gb\|AAA40870.1\| clathryn light...	181.0	[0..4]	[213..20]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFGDDFAAK EDVDPAAEFL AREQSALGDL EAEITGGSAS APPAASTDEG LGELLGGTAS  60
   61 EGDLLSAGGT GGLESSTGSF EVIGGESNEP VGISGPPPSR E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPEKIRKWRE EQKQRLEEKD IEEERKKEEL RQQSKKELDD WLRQIGESIS KTKLASRNAE  60
   61 KQAATLENGT IEPGTEWERI AKLCDFNPKV NKAGKDVSRM RSIYLHLKQN PIQVQKST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1xi4J
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits