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View Structure Prediction Details

Protein: SNCF-PA
Organism: Drosophila melanogaster
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNCF-PA.

Description E-value Query
Range
Subject
Range
gi|33329019 - gi|33329019|gb|AAQ09916.1| CG14112 [Drosophila yakuba]
146.0 [0..29] [146..1]
gi|125979123, gi... - gi|54642358|gb|EAL31107.1| GA12768-PA [Drosophila pseudoobscura], gi|125979123|ref|XP_001353594.1| G...
116.0 [0..1] [146..1]
halo-PA - The gene halo is referred to in FlyBase by the symbol Dmel\halo (CG7428, FBgn0001174). It is a prote...
113.0 [0..45] [134..49]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDQHKRSHK SEKSSRKSGK KHSDKPHKVK THDPLKKQKK RALKKLRRKS ATVNFPYQLF  60
   61 LYRQELRRAS ADFSYLRLSK AKIVLTSQLI AKKMGSCNPD CSVDELKELS REVQFQKRLC 120
  121 HQVERLQQFR QLGLTEMILN GKKTTL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.408935
Match: PF05306.2
Description: No description for PF05306.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle