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View Structure Prediction Details

Protein: SNCF-PA
Organism: Drosophila melanogaster
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNCF-PA.

Description E-value Query
Range
Subject
Range
gi|33329019 - gi|33329019|gb|AAQ09916.1| CG14112 [Drosophila yakuba]
146.0 [0..29] [146..1]
gi|125979123, gi... - gi|54642358|gb|EAL31107.1| GA12768-PA [Drosophila pseudoobscura], gi|125979123|ref|XP_001353594.1| G...
116.0 [0..1] [146..1]
halo-PA - The gene halo is referred to in FlyBase by the symbol Dmel\halo (CG7428, FBgn0001174). It is a prote...
113.0 [0..45] [134..49]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDQHKRSHK SEKSSRKSGK KHSDKPHKVK THDPLKKQKK RALKKLRRKS ATVNFPYQLF  60
   61 LYRQELRRAS ADFSYLRLSK AKIVLTSQLI AKKMGSCNPD CSVDELKELS REVQFQKRLC 120
  121 HQVERLQQFR QLGLTEMILN GKKTTL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.408935
Match: PF05306.2
Description: No description for PF05306.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.584 N/A N/A a.25.1 Ferritin-like
View Download 0.554 N/A N/A f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.538 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.537 N/A N/A a.7.12 Description not found.
View Download 0.506 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.502 N/A N/A a.7.8 GAT domain
View Download 0.424 N/A N/A a.7.1 Spectrin repeat
View Download 0.417 N/A N/A a.25.1 Ferritin-like
View Download 0.414 N/A N/A a.25.1 Ferritin-like
View Download 0.409 N/A N/A a.24.9 alpha-catenin/vinculin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle