YRC Public Data Repository - Protein Structure Prediction

Protein:	Cp16-PA
Organism:	Drosophila melanogaster
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp16-PA.

Description	E-value	Query Range	Subject Range
gi\|134305204, gi... - gi\|7724\|emb\|CAA34686.1\| chorion protein s16 [Drosophila melanogaster], gi\|134305210\|gb\|ABO71742.1\| c...	206.0	[0..1]	[138..1]
gi\|195491080, gi... - gi\|33328989\|gb\|AAQ09901.1\| Cp16 [Drosophila yakuba], gi\|195491080\|ref\|XP_002093409.1\| Cp16 [Drosophi...	205.0	[0..1]	[138..1]
gi\|66803899, gi\|... - gi\|66803899\|gb\|AAY56648.1\| chorion protein 16 [Drosophila simulans], gi\|134305246\|gb\|ABO71760.1\| cho...	194.0	[0..1]	[138..1]
CH16_DROVI - Chorion protein S16 OS=Drosophila virilis GN=Cp16 PE=3 SV=1	188.0	[0..1]	[137..1]
CH16_DROGR - Chorion protein S16 OS=Drosophila grimshawi GN=Cp16 PE=3 SV=1	184.0	[0..1]	[136..1]
CH16_DROSU - Chorion protein S16 OS=Drosophila subobscura GN=Cp16 PE=3 SV=1	179.0	[0..1]	[138..1]
gi\|54641846, gi\|... - gi\|54641846\|gb\|EAL30596.1\| GA19666-PA [Drosophila pseudoobscura], gi\|125978124\|ref\|XP_001353095.1\| G...	162.0	[0..1]	[138..1]
gi\|6900011 - gi\|6900011\|emb\|CAB71297.1\| chorion protein s16 [Ceratitis capitata]	133.0	[0..7]	[138..5]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATLRLLCL MACCVALAVA NRPNYGGSGY GASYGDVVKA AETAEAQASA LTNAAGAAAS  60
   61 AAKLDGADWN SLNRYGWEQG RPLLAKPYGP LDPLYAAALP PRSFVAEVDP VFKKSQYGGS 120
  121 YGENAYLKTD AKLGVVAI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.221849
Match:	PF05836.3
Description:	No description for PF05836.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits