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View Structure Prediction Details

Protein: Cp16-PA
Organism: Drosophila melanogaster
Length: 138 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp16-PA.

Description E-value Query
Range
Subject
Range
gi|134305204, gi... - gi|7724|emb|CAA34686.1| chorion protein s16 [Drosophila melanogaster], gi|134305210|gb|ABO71742.1| c...
206.0 [0..1] [138..1]
gi|195491080, gi... - gi|33328989|gb|AAQ09901.1| Cp16 [Drosophila yakuba], gi|195491080|ref|XP_002093409.1| Cp16 [Drosophi...
205.0 [0..1] [138..1]
gi|66803899, gi|... - gi|66803899|gb|AAY56648.1| chorion protein 16 [Drosophila simulans], gi|134305246|gb|ABO71760.1| cho...
194.0 [0..1] [138..1]
CH16_DROVI - Chorion protein S16 OS=Drosophila virilis GN=Cp16 PE=3 SV=1
188.0 [0..1] [137..1]
CH16_DROGR - Chorion protein S16 OS=Drosophila grimshawi GN=Cp16 PE=3 SV=1
184.0 [0..1] [136..1]
CH16_DROSU - Chorion protein S16 OS=Drosophila subobscura GN=Cp16 PE=3 SV=1
179.0 [0..1] [138..1]
gi|54641846, gi|... - gi|54641846|gb|EAL30596.1| GA19666-PA [Drosophila pseudoobscura], gi|125978124|ref|XP_001353095.1| G...
162.0 [0..1] [138..1]
gi|6900011 - gi|6900011|emb|CAB71297.1| chorion protein s16 [Ceratitis capitata]
133.0 [0..7] [138..5]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATLRLLCL MACCVALAVA NRPNYGGSGY GASYGDVVKA AETAEAQASA LTNAAGAAAS  60
   61 AAKLDGADWN SLNRYGWEQG RPLLAKPYGP LDPLYAAALP PRSFVAEVDP VFKKSQYGGS 120
  121 YGENAYLKTD AKLGVVAI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 75.221849
Match: PF05836.3
Description: No description for PF05836.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.435 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.427 N/A N/A a.24.11 Bacterial GAP domain
View Download 0.423 N/A N/A a.24.11 Bacterial GAP domain
View Download 0.400 N/A N/A a.74.1 Cyclin-like
View Download 0.388 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle