YRC Public Data Repository - Protein Structure Prediction

Protein:	Srp19-PA
Organism:	Drosophila melanogaster
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Srp19-PA.

Description	E-value	Query Range	Subject Range
gi\|40746029, gi\|... - gi\|67516721\|ref\|XP_658246.1\| hypothetical protein AN0642.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	185.0	[0..3]	[152..41]
gi\|12846431 - gi\|12846431\|dbj\|BAB27165.1\| unnamed protein product [Mus musculus]	182.0	[0..9]	[142..1]
gi\|27683535, gi\|... - gi\|27683535\|ref\|XP_214599.1\| PREDICTED: similar to signal recognition particle 19kDa [Rattus norvegi...	181.0	[0..9]	[142..1]
gi\|197100382 - gi\|197100382\|ref\|NP_001125454.1\| signal recognition particle 19kDa [Pongo abelii] gi\|55728098 - gi\|55728098\|emb\|CAH90799.1\| hypothetical protein [Pongo abelii]	181.0	[0..7]	[144..1]
SRP19 - signal recognition particle 19kDa	179.0	[0..9]	[144..1]
SRP19_BOVIN - Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1	177.0	[0..9]	[144..1]
gi\|73954385, gi\|... - gi\|73954385\|ref\|XP_536284.2\| PREDICTED: similar to signal recognition particle 19kDa [Canis familiar...	175.0	[0..9]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVPMKKN WSPSMKHNDM ERWICIYPAY INRKKTRQEG RRLPKENCVD NPSYIEIRDV  60
   61 LSVSNLQFLM ENKKYCRENS SEMEFRGRVR VQLRNVDGTL YNNDFPTRES IMLHIASKIP 120
  121 QLKTRQNKSG DSYHQQSQPQ SNASGSGGGG GGKKGKGKRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1jidA
Description:	SRP19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
7S RNA binding	9.78481287368136	bayes_pls_golite062009
binding	1.52106126273009	bayes_pls_golite062009
RNA binding	0.871295298918697	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: