YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mRpL46-PA
Organism: Drosophila melanogaster
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL46-PA.

Description E-value Query
Range
Subject
Range
RM46_RAT - 39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1
327.0 [0..2] [258..19]
MRPL46 - mitochondrial ribosomal protein L46
325.0 [0..4] [257..21]
gi|114658725 - gi|114658725|ref|XP_510572.2| PREDICTED: mitochondrial ribosomal protein L46 isoform 2 [Pan troglody...
320.0 [0..4] [257..21]
gi|109082282 - gi|109082282|ref|XP_001088970.1| PREDICTED: similar to mitochondrial ribosomal protein L46 isoform 2...
310.0 [0..2] [257..19]
RM46_PONPY - 39S ribosomal protein L46, mitochondrial precursor - Pongo pygmaeus (Orangutan)
RM46_PONAB - 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1
307.0 [0..4] [257..23]
RM46_MOUSE - 39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1
303.0 [0..2] [258..19]
gi|73951430 - gi|73951430|ref|XP_536185.2| PREDICTED: similar to mitochondrial ribosomal protein L46 [Canis famili...
303.0 [0..4] [258..23]
RM46_BOVIN - 39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46 PE=2 SV=1
291.0 [0..6] [258..23]
gi|116127281, gi... - gi|118788447|ref|XP_316723.3| AGAP006684-PA [Anopheles gambiae str. PEST], gi|116127281|gb|EAA11413....
AGAP006684-PA - mRpL46: 39S ribosomal protein L46, mitochondrial|protein_coding|2L:36681148:36682028:-1|gene:AGAP006...
288.0 [0..1] [258..4]
gi|54641160, gi|... - gi|54641160|gb|EAL29910.1| GA12628 [Drosophila pseudoobscura pseudoobscura], gi|125976762|ref|XP_001...
gi|54641160|gb|E... - GA12628-PA [Drosophila pseudoobscura], GA12628 [Drosophila pseudoobscura pseudoobscura]
283.0 [0..1] [258..1]

Back

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRIVQVGA RELSRAQSST ASAEKWDLYA GVLVERLPVV SKSLNPLEKQ FQDLLWRVEY  60
   61 ENSLKSDHEL KHEREIVQAE LIKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.480 a.24.17 Group V grass pollen allergen
View Download 0.413 a.182.1 GatB/YqeY domain
View Download 0.384 g.36.1 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
View Download 0.373 a.74.1 Cyclin-like
View Download 0.369 c.10.1 RNI-like

Predicted Domain #2
Region A:
Residues: [85-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKIQVDLEDA GSKQTAQDLK DAYVEELKKF QLGSRTTPDD QANRTTSTDR CLDDTLYLLV  60
   61 QQKLGQQEHL ILPQGKREEG ESMRQTAERV LRESCGQELQ VLFYGNAPVG FHKYKYPRNQ 120
  121 RTETVGAKVF FYRASLRSGQ VPENLTKFEW LPKEALNEKL TNTAYAQSVK KFLL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.43
Match: 2azwA
Description: Crystal structure of the MutT/nudix family protein from Enterococcus faecalis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.616957420082379 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.128023358756584 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.126599262279799 bayes_pls_golite062009
hydrolase activity 0.0931531162120938 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle