| Protein: | TBPH-PC, TBPH-PF... |
| Organism: | Drosophila melanogaster |
| Length: | 531 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBPH-PC, TBPH-PF....
| Description | E-value | Query Range |
Subject Range |
|
|
312.0 | [0..1] | [462..72] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MDFVQVSEEE GDEPIELPAE EDGTLLLSTL QAQFPGSCGL KYRNLDTKAV RGVRSNEGRL 60
61 FPPSVESGWG EYAYFCVFPK ENKRKSDDNL ENSTAKTKRI ETRLRCTDLI VLGLPWKTTE 120
121 ESLREYFETY GEVLMAQIKK DTKSGQSKGF GFVRFGSYDA QMRVLTNRHL IDGRWCEVKV 180
181 PNSKGMGH
|
| Detection Method: |  |
| Confidence: | 51.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [189-261] |
1 11 21 31 41 51
| | | | | |
1 QVPCKVFVGR CTEDINSDDL REYFSKFGEV TDVFIPRPFR AFSFVTFLDP DVAQSLCGED 60
61 HIIKGVSVHV SNA
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [262-373] |
1 11 21 31 41 51
| | | | | |
1 APKAEQNRNQ QVQSYNYNSA NSFGMHSYHP QGNHMNPGRN GHHRGNNQHN AHGGENAIVP 60
61 NNHNIGTAGY GMGGNNYGGN SGGGYHNNGG NHSSGGNTNR QDGGSQYNSR QS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [374-531] |
1 11 21 31 41 51
| | | | | |
1 NFHGMNQPHN GNVGGSNGWM NRGHLDMPNL QALGINSQGS SSSNQGQNMS NQSMLNLNSL 60
61 PINPALVAAA LNQWSLVGNQ LQNQNQDQQG GNFLSWMAQN GGHNNANNFG GRKGPNNPNN 120
121 NPAANGIKTD NSEPQNGNTG WSNQSSGSQN AAEKSNFL
|
| Detection Method: | |
| Confidence: | 6.09691 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
