YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4091-PA, CG4091-PB
Organism:	Drosophila melanogaster
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4091-PA, CG4091-PB.

Description	E-value	Query Range	Subject Range
gi\|109078370 - gi\|109078370\|ref\|XP_001089116.1\| PREDICTED: similar to tumor necrosis factor, alpha-induced protein ...	345.0	[0..1]	[188..193]
gi\|76612652 - gi\|76612652\|ref\|XP_601426.2\| PREDICTED: similar to tumor necrosis factor, alpha-induced protein 8-li...	344.0	[0..4]	[185..188]
gi\|73970562 - gi\|73970562\|ref\|XP_538548.2\| PREDICTED: similar to tumor necrosis factor, alpha-induced protein 8 [C...	338.0	[0..1]	[188..199]
gi\|114656959 - gi\|114656959\|ref\|XP_523074.2\| PREDICTED: hypothetical protein [Pan troglodytes]	337.0	[0..4]	[185..255]
gi\|109507315, gi... - gi\|109507315\|ref\|XP_001056720.1\| PREDICTED: similar to TNF-induced protein [Rattus norvegicus], gi\|1...	337.0	[0..1]	[188..167]
gi\|50752949 - gi\|50752949\|ref\|XP_425071.1\| PREDICTED: similar to FLJ41287 protein [Gallus gallus]	333.0	[0..4]	[185..270]
TNFAIP8L3 - tumor necrosis factor, alpha-induced protein 8-like 3	333.0	[0..4]	[185..108]
TP8L1_DANRE - Tumor necrosis factor alpha-induced protein 8-like protein 1 OS=Danio rerio GN=tnfaip8l1 PE=2 SV=1	324.0	[0..4]	[188..2]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNVFKSHD IGLRAQKKIL SRMATKNIAK TFIDGTTASL LDNLYRLCKM HTGNKAKAEK  60
   61 LIKNIIKIVI KIGVLHRNNQ FSDEELQKAE LFKRKFQNTQ LSIISFYEVD FTFDLPYLQK 120
  121 SIAESQVALK SIVQPHLTEK SLGRIDEVFD FFGEEALLET AFRPDSPYRE VMGKIVADIN 180
  181 AAMETGDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	145.075721
Match:	PF05527.2
Description:	No description for PF05527.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits