YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5398-PA
Organism:	Drosophila melanogaster
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5398-PA.

Description	E-value	Query Range	Subject Range
gi\|69111664 - gi\|69111664\|gb\|AAZ03394.1\| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]	239.0	[0..2]	[230..7]
gi\|69111702 - gi\|69111702\|gb\|AAZ03395.1\| Aqp4-Luc fusion protein [Reporter vector praAqp4-Luc]	237.0	[0..2]	[230..7]
gi\|115459788, gi... - gi\|50927737\|ref\|XP_473424.1\| OSJNBb0034G17.15 [Oryza sativa (japonica cultivar-group)], gi\|38605857\|...	223.0	[0..4]	[232..14]
gi\|73961781 - gi\|73961781\|ref\|XP_855456.1\| PREDICTED: similar to Aquaporin 4 (WCH4) (Mercurial-insensitive water c...	221.0	[0..2]	[230..104]
gi\|18481673 - gi\|18481673\|gb\|AAL73511.1\|AF465730_1 aquaporin-4 [Coturnix coturnix]	219.0	[0..2]	[230..41]
gi\|52345956, gi\|... - gi\|52345956\|ref\|NP_001004765.1\| aquaporin 4 [Gallus gallus], gi\|52138496\|dbj\|BAD46731.1\| aquaporin 4...	218.0	[0..2]	[230..41]
AQP4_DIPME - Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1	216.0	[0..2]	[230..29]
gi\|148669653, gi... - gi\|18481727\|gb\|AAL73545.1\|AF469168_1 aquaporin-4 M1 isoform [Mus musculus], gi\|160415211\|ref\|NP_0338...	216.0	[0..2]	[230..29]
gi\|27802453, gi\|... - gi\|57164309\|ref\|NP_001009279.1\| aquaporin 4 [Ovis aries], gi\|34539786\|gb\|AAQ74771.1\| aquaporin-4 M1 ...	215.0	[0..2]	[230..29]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWDFFTFIR GATEFSATAL LILLGCMGDS TNQGGESKFL VASVHYGLTV MVVMHVFGFV  60
   61 SGAHSNPCIS ISCYLMGYIA LEVMMMYVVC QMAGAFLGYF LLMQLLPKEL VDKSKPGICL 120
  121 VQPMDTLSTY QVVIIECLLT AVLVLGWCSL WDVRNGRFLD SVAIRMGLLV IACSFAGIQL 180
  181 TGASMNPAKT LVPAIFYGSP NSVLMQLTGQ ILAAIMVPFV WNHAYTPPYK PLEIPVCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	2d57A
Description:	Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits