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View Structure Prediction Details

Protein: apt-PC, apt-PA, ...
Organism: Drosophila melanogaster
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apt-PC, apt-PA, ....

Description E-value Query
Range
Subject
Range
apt-PB - The gene apontic is referred to in FlyBase by the symbol Dmel\apt (CG5393, FBgn0015903). It is a pro...
589.0 [0..2] [483..8]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKQYSATD LEAFMKIAAN WQNSNHNLLE GVDIKTEMTQ YMNSPSMNMY KKRERTQNWN  60
   61 HQEKKYLLDL CRKDMRIIEN KRLDAGLTAV KNKAWKIIHQ KFSNQFGTDR TCNRLKEQWR 120
  121 RMKACTRNEI LDYNNRLARF GAEVADRKKP SPFTFEVWDF MQEAKKACKS EALDGIDYSK 180
  181 IPLALEEGFE YREDYKFN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEDHDMDDSR TPPQELCDVD IKEEENNETF NETFNHHHLN QSDILGSGER LSVSPN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSISRNGIHE AESPATISTS NVLDSSGAYM AGGGDMSGFQ ANFNMNNISA TLEALNALRS  60
   61 GQFPSAAAAA AAAIHQHQAQ AQVAMHHQHN NNNNNNNNNE DDEDSMKPQS KRQRTSSGSM 120
  121 LGSEDQAPVL APSVPASSDS QALERSGSSN GLTMPGTAVS TNANSSSSNN NNFELRMFME 180
  181 MQSKEHMMRM KILEVQLQAA KHSRDLVEIN KTLALQKLQL ELASKRLPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle