YRC Public Data Repository - Protein Structure Prediction

Protein:	bonsai-PA
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bonsai-PA.

Description	E-value	Query Range	Subject Range
gi\|16930613 - gi\|16930613\|gb\|AAL31972.1\|AF435962_1 mitochondrial ribosomal protein S15 [Drosophila melanogaster]	350.0	[0..1]	[280..1]
gi\|54635986, gi\|... - gi\|54635986\|gb\|EAL25389.1\| GA18031 [Drosophila pseudoobscura pseudoobscura], gi\|125808632\|ref\|XP_001... gi\|54635986\|gb\|E... - GA18031-PA [Drosophila pseudoobscura], GA18031 [Drosophila pseudoobscura pseudoobscura]	296.0	[0..1]	[280..1]
AGAP005615-PA - mRpS15: 28S ribosomal protein S15, mitochondrial\|protein_coding\|2L:17874189:17875176:1\|gene:AGAP0056... gi\|118786746, gi... - gi\|118786746\|ref\|XP_315624.3\| AGAP005615-PA [Anopheles gambiae str. PEST], gi\|116126469\|gb\|EAA11722....	279.0	[0..14]	[277..16]
gi\|157107244, gi... - gi\|157107244\|ref\|XP_001649689.1\| 28S ribosomal protein S15, mitochondrial precursor [Aedes aegypti],...	237.0	[0..15]	[264..17]
gi\|91083577 - gi\|91083577\|ref\|XP_968136.1\| PREDICTED: similar to AGAP005615-PA [Tribolium castaneum]	205.0	[0..17]	[266..18]
gi\|39589713, gi\|... - gi\|39589713\|emb\|CAE66948.1\| Hypothetical protein CBG12340 [Caenorhabditis briggsae], gi\|187029476\|em... gi\|157746509 - gi\|157746509\|ref\|XP_001668350.1\| Hypothetical protein CBG12340 [Caenorhabditis briggsae AF16]	196.0	[0..48]	[260..86]
CE25935 - status:Partially_confirmed UniProt:Q9NAP9 protein_id:CAB97235.1	195.0	[0..48]	[260..86]
MRPS15 - mitochondrial ribosomal protein S15	187.0	[0..31]	[203..49]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLLNIAQA GHRQFVREYA FKSDLKIKWM RPEKIACYKP EKSGDLAKLP PLKADELLPE  60
   61 YRDCKELDKA DESVKSLFKL SNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASYLTTKFYR DEMVKEVQRH AQDFGSMEAK LAKMTAVIRR YQEHMDKHPR DKMIKVRLKE  60
   61 LIDKRKKFLK YLRRWDYPRF EWILEKLDLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	2qalO
Description:	No description for 2qalO was found.

Predicted Domain #3

Region A:
Residues: [174-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKPPPTHFHW ITRKESLQKL TDIYCENLKE ERLEAYHKQL QAQQIPFLEE AIKKMQFVRQ  60
   61 EQISCDVPVT VTEEKIADSK RQLEMLKELQ QAEAAASSKK QNEDGFN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits