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View Structure Prediction Details

Protein: qkr58E-1-PA
Organism: Drosophila melanogaster
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for qkr58E-1-PA.

Description E-value Query
Range
Subject
Range
gi|125810821|ref... - GA17559-PA [Drosophila pseudoobscura], GA17559 [Drosophila pseudoobscura pseudoobscura]
gi|125810821, gi... - gi|54636820|gb|EAL26223.1| GA17559 [Drosophila pseudoobscura pseudoobscura], gi|125810821|ref|XP_001...
308.0 [0..1] [396..1]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRDYDRDYN EDAADYKRKR RDEEPAATGA PETPEADGGG HTTSHAALRD TPQLNEKTNA  60
   61 YLQECLLEKK TLEKKHIITK RLLDDEVEKI LVSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPKPEIYAN VYSEKPIRVA QKVLFPIKEY PKFNFVGKIL GPKGNTLRQL QEETMCKMVV  60
   61 MGRNSMRDHG KEEELRSSGN PKYAHLSRDL HVEISTVAPP AEAYHRISYA LGEIRKFMIP 120
  121 DANDDIRLEQ LREMDGKERM YKKSHHYSKS YGDHGAYSSR TPPPASSKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2bl5A
Description: Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.766407798661875 bayes_pls_golite062009
nucleic acid binding 0.1608635436815 bayes_pls_golite062009
RNA binding 0.0205643208063799 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [264-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVYSILEKAR YVMDDPNYGI VKTHRSRDHE LYDHHGEYDR YATPPPQTSK HSTHHAQYDS  60
   61 SSYERDYRRE YHPHSSSSSY AAAYPAKPSN GRSSSSYRPT TSGSGSHSSA HYETGSRSRE 120
  121 SVRYRSAPYP KIR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle